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Clc11G01230 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G01230
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPHD finger protein MALE STERILITY 1
Genome locationClcChr11:1314316..1314609
RNA-Seq ExpressionClc11G01230
SyntenyClc11G01230
Gene Ontology termsGO:0009846 - pollen germination (biological process)
GO:0010208 - pollen wall assembly (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0048655 - anther wall tapetum morphogenesis (biological process)
GO:0055046 - microgametogenesis (biological process)
GO:0071367 - cellular response to brassinosteroid stimulus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032172.1 PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa]4.1e-1782.46Show/hide
Query:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
        + IGKKRRR GGGGGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G
Subjt:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
XP_004140423.1 PHD finger protein MALE STERILITY 1 [Cucumis sativus]2.4e-1785.45Show/hide
Query:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGEC
        + IGKKRRR GGGGGERVFRF +FGENGHPAELVG+FRENVEALL FG+WESGEC
Subjt:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGEC
XP_008456986.1 PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo]4.1e-1782.46Show/hide
Query:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
        + IGKKRRR GGGGGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G
Subjt:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
XP_022156066.1 PHD finger protein MALE STERILITY 1 [Momordica charantia]2.4e-1773.77Show/hide
Query:  MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGV
        M EAIG+KRRR  GGGGE+VFRF +FGENG+P E VG+FRENV ALL FGRWESG+C GG+
Subjt:  MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGV
XP_038891568.1 PHD finger protein MALE STERILITY 1 [Benincasa hispida]6.3e-1883.05Show/hide
Query:  MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
        M E  GKKRRR GGGGGERVFRF +FGENGHPAELVG FRENVEALL FGR E GECGG
Subjt:  MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
TrEMBL top hitse value%identityAlignment
A0A0A0KPP3 Uncharacterized protein1.2e-1785.45Show/hide
Query:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGEC
        + IGKKRRR GGGGGERVFRF +FGENGHPAELVG+FRENVEALL FG+WESGEC
Subjt:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGEC
A0A1S3C4G3 PHD finger protein MALE STERILITY 12.0e-1782.46Show/hide
Query:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
        + IGKKRRR GGGGGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G
Subjt:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
A0A5D3CR48 PHD finger protein MALE STERILITY 12.0e-1782.46Show/hide
Query:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
        + IGKKRRR GGGGGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G
Subjt:  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG
A0A6J1DTQ4 PHD finger protein MALE STERILITY 11.2e-1773.77Show/hide
Query:  MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGV
        M EAIG+KRRR  GGGGE+VFRF +FGENG+P E VG+FRENV ALL FGRWESG+C GG+
Subjt:  MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGV
A0A7J6E6G7 PHD-type domain-containing protein1.2e-0966.07Show/hide
Query:  KKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGVP
        KKR+R     GERVFRF NFGENG+P E VG FRENV+ALLEFG  ES  C  G+P
Subjt:  KKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGVP
SwissProt top hitse value%identityAlignment
Q9FMS5 PHD finger protein MALE STERILITY 11.7e-0554.9Show/hide
Query:  IGKKRRRVGGGGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWES
        I KKR+R    G  RVFR   FGE+GHPAE+    FR+N+  LLEFG +ES
Subjt:  IGKKRRRVGGGGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWES
Arabidopsis top hitse value%identityAlignment
AT5G22260.1 RING/FYVE/PHD zinc finger superfamily protein1.2e-0654.9Show/hide
Query:  IGKKRRRVGGGGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWES
        I KKR+R    G  RVFR   FGE+GHPAE+    FR+N+  LLEFG +ES
Subjt:  IGKKRRRVGGGGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWES

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAGGCAATCGGGAAGAAGAGGAGGAGGGTCGGTGGCGGTGGCGGAGAGAGGGTGTTTAGATTCAACAACTTTGGGGAGAATGGTCATCCGGCAGAGCTTGTGGG
GCAGTTCCGGGAGAATGTGGAGGCGCTACTAGAGTTCGGGCGGTGGGAGAGTGGAGAGTGTGGCGGGGGGGTTCCAGTGTTGGTCGTTTCGTCTGCAGGTTCAGCGACAA
CCGCCTTTCCACGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCAGCCACGGTGGCGGCGAGGGAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGAGGCAATCGGGAAGAAGAGGAGGAGGGTCGGTGGCGGTGGCGGAGAGAGGGTGTTTAGATTCAACAACTTTGGGGAGAATGGTCATCCGGCAGAGCTTGTGGG
GCAGTTCCGGGAGAATGTGGAGGCGCTACTAGAGTTCGGGCGGTGGGAGAGTGGAGAGTGTGGCGGGGGGGTTCCAGTGTTGGTCGTTTCGTCTGCAGGTTCAGCGACAA
CCGCCTTTCCACGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCAGCCACGGTGGCGGCGAGGGAGTGTAA
Protein sequenceShow/hide protein sequence
MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGVPVLVVSSAGSATTAFPRRAVCGGGGGGGSHGGGEGV