CuGenDBv2

Gene ID	Clc11G01415
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	ClcChr11:1476405..1476658
RNA-Seq Expression	Clc11G01415
Synteny	Clc11G01415
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88912.1 RNA polymerase beta [Lagenaria siceraria]

6.6e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

AHM88970.1 RNA polymerase beta [Lagenaria siceraria]

6.6e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

ASY96794.1 RNA polymerase beta' subunit [Cucumis melo var. momordica]

6.6e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

YP_009751644.1 RNA polymerase beta' subunit [Hodgsonia heteroclita]

6.6e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

YP_247590.2 RNA polymerase beta' subunit [Cucumis sativus]

6.6e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE65 DNA-directed RNA polymerase subunit gamma

3.2e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

A0A1X9Q1T5 DNA-directed RNA polymerase subunit beta'

3.2e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

A0A218KG20 DNA-directed RNA polymerase subunit beta'

3.2e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

A0A249RZJ2 DNA-directed RNA polymerase subunit beta'

3.2e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

A0A6M3S6B8 DNA-directed RNA polymerase subunit beta'

3.2e-27

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

SwissProt top hits

e value

%identity

Alignment

A6MM27 DNA-directed RNA polymerase subunit beta'

2.8e-28

75.31

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANK  PNGEIVG               E+DGLFCERI GPIKSGICACGNYRVIGD+K
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

B1A926 DNA-directed RNA polymerase subunit beta'

2.8e-28

75.31

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWAN+  PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGD+K
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

P60287 DNA-directed RNA polymerase subunit beta'

6.2e-28

74.07

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQI+AWANK  PNGE+VG               EKDGLFCERI GPIKSGICACGNYRVIGD+K
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

Q4VZP2 DNA-directed RNA polymerase subunit beta'

8.7e-30

79.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGDKK
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

Q7YJX9 DNA-directed RNA polymerase subunit beta'

6.2e-28

74.07

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIG VSPQQI AWANKT PNGEI+G               EKDGLFCERI GPIKSGICACGNYRVIGD+K
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00180.1 DNA-directed RNA polymerase family protein

5.8e-29

75.31

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK
        MIDRYKHQQLRIGLVSPQQISAWA K  PNGEIVG               EKDGLFCERI GPIKSGICACGNYRVIGD+K
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERILGPIKSGICACGNYRVIGDKK

Sequences

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CDS sequence

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ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCAACCTAATGGCGAGATAGTTGGGGAGAA
AGATGGACTATTTTGTGAAAGAATTTTGGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATTGGAGATAAAAAATAA

mRNA sequence

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Protein sequence

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MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVGEKDGLFCERILGPIKSGICACGNYRVIGDKK

Clc11G01415 (gene) of Watermelon (cordophanus) v2 genome