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Clc11G01600 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G01600
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-box protein
Genome locationClcChr11:1640038..1645328
RNA-Seq ExpressionClc11G01600
SyntenyClc11G01600
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0031461 - cullin-RING ubiquitin ligase complex (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
GO:0097602 - cullin family protein binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024766 - Zinc finger, RING-H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144035.1 RING-box protein 1a [Cucumis sativus]1.8e-6197.39Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLD+DVPMVPAGEASSS+GPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

XP_008342455.1 RING-box protein 1a [Malus domestica]1.0e-6197.39Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVPM+PAGE SSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

XP_015889019.1 RING-box protein 1a [Ziziphus jujuba]7.9e-6298.26Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVPMVP GEASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

XP_022933228.1 RING-box protein 1a [Cucurbita moschata]7.9e-6298.26Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVPMVPAGEASSS+GPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

XP_038889977.1 RING-box protein 1a-like isoform X1 [Benincasa hispida]6.0e-6298.26Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVPMVPAG+ASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

TrEMBL top hitse value%identityAlignment
A0A5N5F037 RING-box protein 1a5.0e-6297.39Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVPM+PAGE SSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

A0A6J1DPM4 RING-box protein 1a-like3.8e-6298.26Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVPMVP GEASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

A0A6J1F460 RING-box protein 1a3.8e-6298.26Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVPMVPAGEASSS+GPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

A0A6J1I027 RING-box protein 1a3.8e-6298.26Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVPMVPAGEASSS+GPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

A0A6P4A6G4 RING-box protein 1a3.8e-6298.26Show/hide
Query:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVPMVP GEASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKY
        QVCPLDNSEWEFQKY
Subjt:  QVCPLDNSEWEFQKY

SwissProt top hitse value%identityAlignment
P62877 E3 ubiquitin-protein ligase RBX11.1e-5084.91Show/hide
Query:  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M  A +  + SG +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKY
        WEFQKY
Subjt:  WEFQKY

P62878 E3 ubiquitin-protein ligase RBX11.1e-5084.91Show/hide
Query:  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M  A +  + SG +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKY
        WEFQKY
Subjt:  WEFQKY

Q8QG64 RING-box protein 13.2e-5083.96Show/hide
Query:  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M  A +  + S  +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKY
        WEFQKY
Subjt:  WEFQKY

Q940X7 RING-box protein 1a5.0e-5992.24Show/hide
Query:  MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKY
        RQVCPLDNSEWEFQKY
Subjt:  RQVCPLDNSEWEFQKY

Q9M2B0 RING-box protein 1b2.9e-5184.48Show/hide
Query:  MATLDSDVPMVPAGEASSSSGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MA+L+SDV M   GE+SS S P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVPMVPAGEASSSSGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKY
        RQVCPLD  EWEFQKY
Subjt:  RQVCPLDNSEWEFQKY

Arabidopsis top hitse value%identityAlignment
AT3G05870.1 anaphase-promoting complex/cyclosome 112.0e-1539.56Show/hide
Query:  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK
        K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+  +T Q  CP+   EW+F++
Subjt:  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK

AT3G42830.1 RING/U-box superfamily protein2.1e-5284.48Show/hide
Query:  MATLDSDVPMVPAGEASSSSGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MA+L+SDV M   GE+SS S P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVPMVPAGEASSSSGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKY
        RQVCPLD  EWEFQKY
Subjt:  RQVCPLDNSEWEFQKY

AT5G20570.1 RING-box 13.5e-6092.24Show/hide
Query:  MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKY
        RQVCPLDNSEWEFQKY
Subjt:  RQVCPLDNSEWEFQKY

AT5G20570.2 RING-box 14.0e-5676.43Show/hide
Query:  MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW------------------
        MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW                  
Subjt:  MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW------------------

Query:  ------GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
              GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Subjt:  ------GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY

AT5G20570.3 RING-box 15.3e-5679.1Show/hide
Query:  MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
        MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAW                   IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
Subjt:  MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW

Query:  GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
        GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Subjt:  GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCTTGGACTCCGATGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAA
CGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCA
GCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGTCCATTGGATAATAGCGAGTGG
GAGTTTCAGAAGTACGTCTCAACCACGCCTTCGCTATCGCAAGAATATAGCGATGGAATAGCTATCGCTCACTCAGCTGCTTCGCGTATTATGAAAGCCGTATTGCCTAA
GGGGGCATGCTGCAAGAGCGTAGGAGTGCAGTGGCATGGGACCGCCCGTTCCTTCTCCCAATATCCAACTGCCGCTTTTATGGTTGCTATGCTTAATGGACCTGAGCTGA
CCTCTCCCCAATTTGTGCATTCAAGGAGTTTAGAATGCCCCATTCTCCTTACTGTTGTTGCACTCACTAAACTCACCACAGGAAGAATCATTTCGACTCGGCCGCCGACT
TCCTCAGCTAACACTGTACCTTATTTTACATTCTTGGGACTAGTTGACATTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACCTTGGACTCCGATGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAA
CGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCA
GCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGTCCATTGGATAATAGCGAGTGG
GAGTTTCAGAAGTACGTCTCAACCACGCCTTCGCTATCGCAAGAATATAGCGATGGAATAGCTATCGCTCACTCAGCTGCTTCGCGTATTATGAAAGCCGTATTGCCTAA
GGGGGCATGCTGCAAGAGCGTAGGAGTGCAGTGGCATGGGACCGCCCGTTCCTTCTCCCAATATCCAACTGCCGCTTTTATGGTTGCTATGCTTAATGGACCTGAGCTGA
CCTCTCCCCAATTTGTGCATTCAAGGAGTTTAGAATGCCCCATTCTCCTTACTGTTGTTGCACTCACTAAACTCACCACAGGAAGAATCATTTCGACTCGGCCGCCGACT
TCCTCAGCTAACACTGTACCTTATTTTACATTCTTGGGACTAGTTGACATTCCATAACCGAGCTGCTCGAAGGTTCCAAAAGAGATACAGATAGACTAAGGGAGCAAGCA
GTGGTCTGTGGCTAGCAACACAATTGAAATGGATTACAGCAGCAGTTTCCAGTACATCCACAACAGCTTTTGCTACCAAAACAGCAACAAGGTCGTATATTTGGACATTT
TCCTAACGTGCATTTGCATTTGCATTTGCATTCGCAGCATGGACAATCTAGGCAGGAGCAGGAAGGTAATGAAAAATGGCTACAACATTGAGTGCATGAGATGGTTGGAC
AAGGGCATGTGCATTGGGGTAATGTTGGGCAAGTGCAACAACATTGGCCACACTGCCCACAACACTCCCTGCACTCTCCGCAACACTGCCACTTCGGTAATTTACAGCTG
CCGCATGATAAGCATTTACATGGGTTATTACAATTGCAGCAGGGTGGGATTTCGAGATGGATCGAGCATCCAGCATAACAGCAACAGCAAAT
Protein sequenceShow/hide protein sequence
MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEW
EFQKYVSTTPSLSQEYSDGIAIAHSAASRIMKAVLPKGACCKSVGVQWHGTARSFSQYPTAAFMVAMLNGPELTSPQFVHSRSLECPILLTVVALTKLTTGRIISTRPPT
SSANTVPYFTFLGLVDIP