CuGenDBv2

Gene ID	Clc11G01670
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Mediator of RNA polymerase II transcription subunit 20
Genome location	ClcChr11:1679802..1682127
RNA-Seq Expression	Clc11G01670
Synteny	Clc11G01670
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0006383 - transcription by RNA polymerase III (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0016592 - mediator complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003713 - transcription coactivator activity (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR013921 - Mediator complex, subunit Med20

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004141069.1 mediator of RNA polymerase II transcription subunit 20a [Cucumis sativus]

2.1e-115

90.87

Show/hide

Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                  GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        E NFAEYGLSDYYTSQHTAVQY NVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

XP_008459711.1 PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis melo]

6.8e-114

89.21

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Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                  GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQ+M+EFFDVWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        E NFAEYGLSD+YT QHTAVQY NVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

XP_022946745.1 mediator of RNA polymerase II transcription subunit 20a-like [Cucurbita moschata]

5.2e-114

89.21

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Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRD N+ A EFPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                  GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKS+QVMEEFF+VWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

XP_038889134.1 mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Benincasa hispida]

1.5e-116

91.29

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Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                  GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSR+VMEEFF+VWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

XP_038889135.1 mediator of RNA polymerase II transcription subunit 20a-like isoform X2 [Benincasa hispida]

3.1e-114

90.04

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Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                     YQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSR+VMEEFF+VWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHQ1 Mediator of RNA polymerase II transcription subunit 20

1.0e-115

90.87

Show/hide

Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                  GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        E NFAEYGLSDYYTSQHTAVQY NVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

A0A1S3CAW6 Mediator of RNA polymerase II transcription subunit 20

3.3e-114

89.21

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Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                  GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQ+M+EFFDVWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        E NFAEYGLSD+YT QHTAVQY NVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

A0A5D3CH02 Mediator of RNA polymerase II transcription subunit 20

3.3e-114

89.21

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Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                  GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQ+M+EFFDVWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        E NFAEYGLSD+YT QHTAVQY NVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

A0A6J1G4U3 Mediator of RNA polymerase II transcription subunit 20

2.5e-114

89.21

Show/hide

Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRD N+ A EFPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                  GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKS+QVMEEFF+VWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

A0A6J1KEU1 Mediator of RNA polymerase II transcription subunit 20

2.5e-114

89.21

Show/hide

Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRD N+ A EFPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQAIMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYKLRVALNFE                  GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKS+QVMEEFF+VWQEAMSKSSLPGRFMHI
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN
        EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ ARN
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-ARN

SwissProt top hits

e value

%identity

Alignment

Q6NPF4 Mediator of RNA polymerase II transcription subunit 20a

9.7e-87

67.93

Show/hide

Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MP+KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +YKP+L+DQ     EFPRDFLGISL +QPNKYY IIR QRIVLEAD +IQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYK +VAL F+                  GFQYQLGDF+LRVGKVVP +SEN+RGIVME+EYLPISSMEK+++VMEEF ++W EA++K SLPG+F++I
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ
        + NF E+GL D YT QHTAV+YA VMA +IATVQAV+
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ

Q9M0S0 Mediator of RNA polymerase II transcription subunit 20b

5.3e-77

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Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MP+KW+LHWQPN GST +SQILNEV+Q +ES++GVK G WKATL +YKP+L+DQ    AEFPR+F+GISLPE+P+KYY +IR QRIV+EAD +IQ IME 
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYK +++  FE                  G +YQLGDF+LRVGKVVP ++E +RG+VME+EYLPISSM  ++++MEEF ++WQEAMSK SLPG+F++ 
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQA
        E NF ++GL D YT QHTAV YA  MA L+A +QA
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQA

Arabidopsis top hits

e value

%identity

Alignment

AT2G28020.1 BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT2G28230.1)

3.2e-16

61.76

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Query:  MEKSRQVMEEFFDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQ-YANVMAQLIATVQAV
        ME +R+VMEEF ++W EA++K SLPG+F++ + NF E+GL D YT QHTAV+ YA VMA +IATVQAV
Subjt:  MEKSRQVMEEFFDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQ-YANVMAQLIATVQAV

AT2G28230.1 TATA-binding related factor (TRF) of subunit 20 of Mediator complex

6.9e-88

67.93

Show/hide

Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MP+KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +YKP+L+DQ     EFPRDFLGISL +QPNKYY IIR QRIVLEAD +IQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYK +VAL F+                  GFQYQLGDF+LRVGKVVP +SEN+RGIVME+EYLPISSMEK+++VMEEF ++W EA++K SLPG+F++I
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ
        + NF E+GL D YT QHTAV+YA VMA +IATVQAV+
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ

AT4G09070.1 TATA-binding related factor (TRF) of subunit 20 of Mediator complex

3.8e-78

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Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK
        MP+KW+LHWQPN GST +SQILNEV+Q +ES++GVK G WKATL +YKP+L+DQ    AEFPR+F+GISLPE+P+KYY +IR QRIV+EAD +IQ IME 
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEK

Query:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI
        LQSYK +++  FE                  G +YQLGDF+LRVGKVVP ++E +RG+VME+EYLPISSM  ++++MEEF ++WQEAMSK SLPG+F++ 
Subjt:  LQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHI

Query:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQA
        E NF ++GL D YT QHTAV YA  MA L+A +QA
Subjt:  EPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCGCTAAAATGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGGTTTCACAATGTGTTGAGAGTATCCATGGCGTTAAAGG
AGGAAAATGGAAAGCTACTCTCACTTTCTACAAACCCATCTTACGAGACCAAAACCTACCGGCGGCCGAGTTCCCGCGGGATTTTCTCGGAATTTCGCTGCCCGAGCAAC
CAAACAAGTATTACCTTATAATTCGTGGCCAACGGATTGTCTTGGAAGCTGATTTCACGATTCAGGCCATAATGGAGAAGTTGCAGTCTTACAAATTGCGCGTTGCTCTC
AATTTCGAGGTTGACCACTCAACTTCTCTAGTTCTGATGCAGTTCACATTATTGGTTTCTCAGGGGTTCCAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGT
TGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGATTGAGTATCTCCCAATTTCTTCAATGGAGAAATCAAGACAGGTAATGGAGGAGTTCTTCGATGTAT
GGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAACCAAACTTTGCAGAATATGGACTGTCGGATTACTACACTTCTCAACACACAGCAGTT
CAGTATGCCAACGTGATGGCTCAACTTATCGCTACTGTGCAAGCAGTTCAAGCAAGAAATTAG

mRNA sequence

Show/hide mRNA sequence

CAAAAAATCAAAAGAATTGTATGGATCCCCAAAGGCCATGGCAAGAAGTACTCAAGTTTGGGCTGGCAGTGGTCTTTATACTTTCCATTGGGCTTTCCGCAAAACTTGCA
AATTGTTCCTAACCTGCTCCGGATCCGACTAATCTCCGCCGTCTCGCTGCAGCTTTAGTCCGGCCGGAAGTATGCCGCTAAAATGGGTTTTGCATTGGCAACCCAATGCC
GGCAGCACTGTTAACAGTCAGATACTCAACGAGGTTTCACAATGTGTTGAGAGTATCCATGGCGTTAAAGGAGGAAAATGGAAAGCTACTCTCACTTTCTACAAACCCAT
CTTACGAGACCAAAACCTACCGGCGGCCGAGTTCCCGCGGGATTTTCTCGGAATTTCGCTGCCCGAGCAACCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATTG
TCTTGGAAGCTGATTTCACGATTCAGGCCATAATGGAGAAGTTGCAGTCTTACAAATTGCGCGTTGCTCTCAATTTCGAGGTTGACCACTCAACTTCTCTAGTTCTGATG
CAGTTCACATTATTGGTTTCTCAGGGGTTCCAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTAT
GGAGATTGAGTATCTCCCAATTTCTTCAATGGAGAAATCAAGACAGGTAATGGAGGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTT
TCATGCACATAGAACCAAACTTTGCAGAATATGGACTGTCGGATTACTACACTTCTCAACACACAGCAGTTCAGTATGCCAACGTGATGGCTCAACTTATCGCTACTGTG
CAAGCAGTTCAAGCAAGAAATTAGCATCAAAATTGCTTTTATTTATCAGGTTGAGATCTGTACTGATGACCCATTCTCAACTCCCTAATGACTTGAATTAAAAAACAAAT
GAAATATTTCATATTCTGC

Protein sequence

Show/hide protein sequence

MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVAL
NFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAV
QYANVMAQLIATVQAVQARN

Clc11G01670 (gene) of Watermelon (cordophanus) v2 genome