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Clc11G01690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G01690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionElf4 domain-containing protein
Genome locationClcChr11:1686882..1687307
RNA-Seq ExpressionClc11G01690
SyntenyClc11G01690
Gene Ontology termsGO:0009649 - entrainment of circadian clock (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599530.1 Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia]8.3e-3580.81Show/hide
Query:  GREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPGHKRHRPPP
        GR+MDGKM +TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SAA PGHKR+RPPP
Subjt:  GREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPGHKRHRPPP

XP_016719642.1 protein ELF4-LIKE 3-like [Gossypium hirsutum]8.6e-3274.76Show/hide
Query:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAV---PGHKR
        L  G E+D K+V+TFQKNFV+V+NILDQNRLLINEINQNHE+K+PDNLT+NV LIRELNNNIRRVVDLYADLSTS+TKS+D S+SDGDS       G+KR
Subjt:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAV---PGHKR

Query:  HRP
        +RP
Subjt:  HRP

XP_022946747.1 protein ELF4-LIKE 3-like [Cucurbita moschata]3.7e-3575Show/hide
Query:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEGE      +  GR+MDGKM +TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SA
Subjt:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Query:  AVPGHKRHRPPP
        A PGHKR+RPPP
Subjt:  AVPGHKRHRPPP

XP_023521403.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo]6.4e-3575Show/hide
Query:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEGE      +  GR+MDGKM  TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SA
Subjt:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Query:  AVPGHKRHRPPP
        A PGHKR+RPPP
Subjt:  AVPGHKRHRPPP

XP_038890489.1 protein ELF4-LIKE 3-like [Benincasa hispida]6.8e-3779.65Show/hide
Query:  MEGEM----RLWKG-REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS
        MEGE      + KG REMDGKMV+TFQKNFV+VENILDQNRLLINEINQNHESK+P NLT+NV LIRELNNNIRRVVDLYADLSTSFTKS+D    DGDS
Subjt:  MEGEM----RLWKG-REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS

Query:  AAVPGHKRHRPPP
        A  PGHKR+RPPP
Subjt:  AAVPGHKRHRPPP

TrEMBL top hitse value%identityAlignment
A0A1U8LYM5 protein ELF4-LIKE 3-like4.2e-3274.76Show/hide
Query:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAV---PGHKR
        L  G E+D K+V+TFQKNFV+V+NILDQNRLLINEINQNHE+K+PDNLT+NV LIRELNNNIRRVVDLYADLSTS+TKS+D S+SDGDS       G+KR
Subjt:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAV---PGHKR

Query:  HRP
        +RP
Subjt:  HRP

A0A6I9U178 protein ELF4-LIKE 34.2e-3271.43Show/hide
Query:  MEGE--MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA--
        MEG+    L  G +MDGK++++FQK+FV+V+NILDQNRLLINEINQNHESK+PDNL++NV LIRELNNNIRRVVDLYADLSTSFTKS+D S S+GDS+  
Subjt:  MEGE--MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA--

Query:  --AVPGHKRHRP
             GHKRHRP
Subjt:  --AVPGHKRHRP

A0A6J1G4K6 protein ELF4-LIKE 3-like1.8e-3575Show/hide
Query:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEGE      +  GR+MDGKM +TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SA
Subjt:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Query:  AVPGHKRHRPPP
        A PGHKR+RPPP
Subjt:  AVPGHKRHRPPP

A0A6J1KJ14 protein ELF4-LIKE 3-like1.8e-3575Show/hide
Query:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEGE      +  GR+MDGKM +TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SA
Subjt:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Query:  AVPGHKRHRPPP
        A PGHKR+RPPP
Subjt:  AVPGHKRHRPPP

F6HGP9 Elf4 domain-containing protein2.4e-3270.43Show/hide
Query:  NMEGE--MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA
        NMEG+    L  G ++DGK+++TFQK+FV+V+NILDQNRLLINEINQNHESK+PDNL++NV LIRELNNNIRRVVDLYADLSTSFTKSVD S S+GDS+ 
Subjt:  NMEGE--MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA

Query:  V------PGHKRHRP
                GHKR+RP
Subjt:  V------PGHKRHRP

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 45.8e-1544.83Show/hide
Query:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPG
        D  M E   +NF +V+++LD+NR LI ++N NH+S++ DN++KNVALI+ELN NI +VV++Y+DL+TSF+       +  D     G
Subjt:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPG

O80877 Protein ELF4-LIKE 12.1e-1242.35Show/hide
Query:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDP---SASDGDS
        D ++ +T    F + +  LDQNR LI  +N+NH S++PDN+++NV LI E+N NI +V+++Y+DLS +F K  D    +  DGD+
Subjt:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDP---SASDGDS

Q570U6 Protein ELF4-LIKE 49.6e-2665.31Show/hide
Query:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEG++    G    MDGK++++FQK+FV V++ILDQNRLLINEINQNHESK PDNL +NV LI+ELNNNIRRV  LY DLS SF +SVD S S+G+S+
Subjt:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Q8S8F5 Protein ELF4-LIKE 31.2e-2861.47Show/hide
Query:  MEGE---MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA
        MEG+     +  G +MDGK+++TF+K+FV+V+NILD NRLLINEINQNHESK+PDNL +NV LIRELNNN+RRV  LY DLS +F+KS++ S S+GDS+ 
Subjt:  MEGE---MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA

Query:  VPGHKRHRP
          G++R RP
Subjt:  VPGHKRHRP

Q94BS8 Protein ELF4-LIKE 24.0e-2463.92Show/hide
Query:  MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS
        MEG++    G   +MDGK+++ FQK+FV+V++ILDQNRLLINEINQNHESK  D+L +NV LIRELNNNIR V  LY DLS SF +SVD S S+G+S
Subjt:  MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 46.8e-2765.31Show/hide
Query:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEG++    G    MDGK++++FQK+FV V++ILDQNRLLINEINQNHESK PDNL +NV LI+ELNNNIRRV  LY DLS SF +SVD S S+G+S+
Subjt:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

AT1G17455.2 ELF4-like 46.8e-2765.31Show/hide
Query:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEG++    G    MDGK++++FQK+FV V++ILDQNRLLINEINQNHESK PDNL +NV LI+ELNNNIRRV  LY DLS SF +SVD S S+G+S+
Subjt:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

AT1G72630.1 ELF4-like 22.9e-2563.92Show/hide
Query:  MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS
        MEG++    G   +MDGK+++ FQK+FV+V++ILDQNRLLINEINQNHESK  D+L +NV LIRELNNNIR V  LY DLS SF +SVD S S+G+S
Subjt:  MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS

AT2G06255.1 ELF4-like 38.6e-3061.47Show/hide
Query:  MEGE---MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA
        MEG+     +  G +MDGK+++TF+K+FV+V+NILD NRLLINEINQNHESK+PDNL +NV LIRELNNN+RRV  LY DLS +F+KS++ S S+GDS+ 
Subjt:  MEGE---MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA

Query:  VPGHKRHRP
          G++R RP
Subjt:  VPGHKRHRP

AT2G40080.1 Protein of unknown function (DUF1313)4.1e-1644.83Show/hide
Query:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPG
        D  M E   +NF +V+++LD+NR LI ++N NH+S++ DN++KNVALI+ELN NI +VV++Y+DL+TSF+       +  D     G
Subjt:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATGTTTGAATTTAAATTATGGAAATTGGAAGTAATTATTTATTTAATTAATATTATTGGAAGCAGGATTATTATTATAATTGGAAGTGATAATATGGAAGGGGA
GATGAGATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAAGAATTTCGTTAAAGTTGAGAATATTTTAGACCAAAACAGATTGCTGATTAATG
AAATTAACCAAAATCACGAGTCCAAATTGCCGGATAATCTCACCAAAAACGTCGCTCTAATTCGCGAGCTCAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGAT
CTCTCCACTTCCTTCACTAAATCCGTCGACCCTTCCGCCTCCGATGGAGACTCCGCCGCCGTGCCTGGCCACAAGCGCCACCGTCCTCCGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTATGTTTGAATTTAAATTATGGAAATTGGAAGTAATTATTTATTTAATTAATATTATTGGAAGCAGGATTATTATTATAATTGGAAGTGATAATATGGAAGGGGA
GATGAGATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAAGAATTTCGTTAAAGTTGAGAATATTTTAGACCAAAACAGATTGCTGATTAATG
AAATTAACCAAAATCACGAGTCCAAATTGCCGGATAATCTCACCAAAAACGTCGCTCTAATTCGCGAGCTCAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGAT
CTCTCCACTTCCTTCACTAAATCCGTCGACCCTTCCGCCTCCGATGGAGACTCCGCCGCCGTGCCTGGCCACAAGCGCCACCGTCCTCCGCCCTAG
Protein sequenceShow/hide protein sequence
MIMFEFKLWKLEVIIYLINIIGSRIIIIIGSDNMEGEMRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYAD
LSTSFTKSVDPSASDGDSAAVPGHKRHRPPP