CuGenDBv2

Gene ID	Clc11G01730
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem II PsbX
Genome location	ClcChr11:1711622..1711999
RNA-Seq Expression	Clc11G01730
Synteny	Clc11G01730
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061475.1 membrane family protein [Cucumis melo var. makuwa]

2.2e-47

92.8

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

XP_008459641.1 PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo]

2.4e-46

91.2

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SM MPITNAAQKR R AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

XP_011648590.1 uncharacterized protein LOC105434533 [Cucumis sativus]

1.9e-46

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

3.2e-46

91.2

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSAVSMAMPITNA QKRAR+ +AFAK LPLRPSNKPT   ASSNS  KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGA+IGVSNFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

9.9e-48

93.6

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   +ASSNSS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIL7 Uncharacterized protein

9.0e-47

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

A0A1S3CAS0 uncharacterized protein LOC103498700

1.2e-46

91.2

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SM MPITNAAQKR R AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

A0A5A7V6L0 Membrane family protein

1.1e-47

92.8

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

1.5e-46

91.2

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSAVSMAMPITNA QKRAR+ +AFAK LPLRPSNKPT   ASSNS  KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGA+IGVSNFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

5.9e-46

90.4

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSAVSMAMPITNA QKRAR+ +AFAK LPLRPSNKPT   ASSNS  KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVV AILGA+IGVSNFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

1.0e-26

55.2

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+S+  P+          +  F KPLPL+PS    +  A+   + + QV+A   +KA+ G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        +GG+V+T I+G V+GVSNFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCCATTACTAACGCAGCTCAGAAGAGAGCGAGGAACGCTGAAGCCTTTGCCAAGCCATTGCCTTTGAGGCCTTCCAA
CAAGCCAACAAGTGCTTCGGCTTCATCGAACTCCAGCGTCAAGTTTCAAGTGCGAGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCAACTGCACTGACGGCTT
CCATGGTGCTTCCTGAGGTGGCTGAAGCTGCCGGGCCTGGAGTTAGTCCTTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTG
GGTGCAGTTATCGGCGTCTCCAATTTCGATCCCGTCAAGCGGACTTGA

mRNA sequence

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Protein sequence

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MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIL
GAVIGVSNFDPVKRT

Clc11G01730 (gene) of Watermelon (cordophanus) v2 genome