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Clc11G01810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G01810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosomal protein L18ae family
Genome locationClcChr11:1751482..1753300
RNA-Seq ExpressionClc11G01810
SyntenyClc11G01810
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141063.1 uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus]4.1e-5795.61Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKD  DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIA
        DPRERAGLAASAIA
Subjt:  DPRERAGLAASAIA

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]3.1e-5795.61Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKD  DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIA
        DPRERAGLAASAIA
Subjt:  DPRERAGLAASAIA

XP_022154699.1 uncharacterized protein LOC111021894 isoform X1 [Momordica charantia]1.4e-6078.67Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        D +  +T QLVKSVSDKHLDLLRPSAR CSIF+GQGKD SDH+RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIAVSV--SPSTCMFDHLVSRRSFSPMIARPSPHLQLYS
        DPRERAGLAASAIA  +     +CMF HLVSR S S +IA P P L+L+S
Subjt:  DPRERAGLAASAIAVSV--SPSTCMFDHLVSRRSFSPMIARPSPHLQLYS

XP_022154700.1 uncharacterized protein LOC111021894 isoform X2 [Momordica charantia]5.2e-6078Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        + +  +T QLVKSVSDKHLDLLRPSAR CSIF+GQGKD SDH+RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIAVSV--SPSTCMFDHLVSRRSFSPMIARPSPHLQLYS
        DPRERAGLAASAIA  +     +CMF HLVSR S S +IA P P L+L+S
Subjt:  DPRERAGLAASAIAVSV--SPSTCMFDHLVSRRSFSPMIARPSPHLQLYS

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]3.7e-5897.37Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        +GKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKD SDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIA
        DPRERAGLAASAIA
Subjt:  DPRERAGLAASAIA

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein2.0e-5795.61Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKD  DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIA
        DPRERAGLAASAIA
Subjt:  DPRERAGLAASAIA

A0A1S3CAZ9 uncharacterized protein LOC1034986581.5e-5795.61Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKD  DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIA
        DPRERAGLAASAIA
Subjt:  DPRERAGLAASAIA

A0A5D3CGZ6 60S ribosomal protein L18a-11.5e-5795.61Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        +GK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKD  DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIA
        DPRERAGLAASAIA
Subjt:  DPRERAGLAASAIA

A0A6J1DKD4 uncharacterized protein LOC111021894 isoform X22.5e-6078Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        + +  +T QLVKSVSDKHLDLLRPSAR CSIF+GQGKD SDH+RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIAVSV--SPSTCMFDHLVSRRSFSPMIARPSPHLQLYS
        DPRERAGLAASAIA  +     +CMF HLVSR S S +IA P P L+L+S
Subjt:  DPRERAGLAASAIAVSV--SPSTCMFDHLVSRRSFSPMIARPSPHLQLYS

A0A6J1DMX6 uncharacterized protein LOC111021894 isoform X16.6e-6178.67Show/hide
Query:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR
        D +  +T QLVKSVSDKHLDLLRPSAR CSIF+GQGKD SDH+RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARR

Query:  DPRERAGLAASAIAVSV--SPSTCMFDHLVSRRSFSPMIARPSPHLQLYS
        DPRERAGLAASAIA  +     +CMF HLVSR S S +IA P P L+L+S
Subjt:  DPRERAGLAASAIAVSV--SPSTCMFDHLVSRRSFSPMIARPSPHLQLYS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family3.9e-2159.76Show/hide
Query:  DVSDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAVSV
        ++ +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIA  +
Subjt:  DVSDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAVSV

AT1G54217.2 Ribosomal protein L18ae family1.0e-2160.98Show/hide
Query:  DVSDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAVSV
        D+ +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIA  +
Subjt:  DVSDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAVSV

AT4G26060.1 Ribosomal protein L18ae family3.4e-3362.73Show/hide
Query:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPR
        D + +LVKSV+DKH  L+RP A+  S      KD     + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF FP LWYYAT+LYF N  R+DPR
Subjt:  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPR

Query:  ERAGLAASAI
        ERAGLAASAI
Subjt:  ERAGLAASAI

AT5G57060.1 FUNCTIONS IN: molecular_function unknown5.4e-3159.43Show/hide
Query:  QLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAG
        +LVK ++D+H  L++ ++R  S      KD     + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP LWYYA  LYF N  R+DPRERAG
Subjt:  QLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAG

Query:  LAASAI
        LAASAI
Subjt:  LAASAI

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)2.1e-2770.51Show/hide
Query:  KDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAI
        KD     + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP LWYYA  LYF N  R+DPRERAGLAASAI
Subjt:  KDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAGTACCTTAATTCTTCTTATAACTTGGTTTGCTTATGATATCACTTATGATGGAAAGATTGACCAGACGGTGCAACTGGTGAAGTCGGTTTCTGATAAGCA
TCTTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGTTTCAGATCACATAAGGAGCAAGTACACACTTCTCAGGGATGTAGAGG
ATTCTCAAGTAGGGCTATATGACAAACCTCTCCCGTGTTTCGGCTGTGGCATAGGATGGTTTTCTTTCCTTCTTGGGTTTTTTTTCCCACTACTGTGGTACTATGCCACG
ATTCTCTACTTCTGGAATGCCCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCATCTGCCATTGCTGTAAGTGTTTCTCCCAGCACTTGCATGTTCGATCATCTTGT
TAGTCGTCGTAGCTTTTCTCCTATGATAGCCCGTCCATCTCCACACTTGCAACTGTATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCAAGTACCTTAATTCTTCTTATAACTTGGTTTGCTTATGATATCACTTATGATGGAAAGATTGACCAGACGGTGCAACTGGTGAAGTCGGTTTCTGATAAGCA
TCTTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGTTTCAGATCACATAAGGAGCAAGTACACACTTCTCAGGGATGTAGAGG
ATTCTCAAGTAGGGCTATATGACAAACCTCTCCCGTGTTTCGGCTGTGGCATAGGATGGTTTTCTTTCCTTCTTGGGTTTTTTTTCCCACTACTGTGGTACTATGCCACG
ATTCTCTACTTCTGGAATGCCCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCATCTGCCATTGCTGTAAGTGTTTCTCCCAGCACTTGCATGTTCGATCATCTTGT
TAGTCGTCGTAGCTTTTCTCCTATGATAGCCCGTCCATCTCCACACTTGCAACTGTATTCTTAATCTTTTGCCCATTCAGCCTTGCCAATGCAGTTTCAATCTGAACAGC
CCTGCTCGACTTTGGTGTTTTCTGCTAGTTTTCTTCGCAAAAAGAATGCAAATGTTTATAACCATATATACATATATTTGCCACCTCTTTCAGAAGAGAGTTGTCGCATT
TGTAATACACAAAGAATACGTAATACATAATTTTAGATCCCTCGATACTATAATCCAAAGTTTAGTT
Protein sequenceShow/hide protein sequence
MDPSTLILLITWFAYDITYDGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYAT
ILYFWNARRDPRERAGLAASAIAVSVSPSTCMFDHLVSRRSFSPMIARPSPHLQLYS