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Clc11G02540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G02540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
Genome locationClcChr11:2452131..2455359
RNA-Seq ExpressionClc11G02540
SyntenyClc11G02540
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061549.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]1.5e-4489.92Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGMFCLSI
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIESQ WGLVPQGMFCLS 
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGMFCLSI

Query:  FLHLVLVNADDSSLLYLLE
        FLHL LVNADDS LLY+LE
Subjt:  FLHLVLVNADDSSLLYLLE

XP_004139345.1 uncharacterized protein LOC101209110 [Cucumis sativus]4.1e-3492.63Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        MASLKAVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIESQ WGLVPQG+
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM

XP_008458440.1 PREDICTED: uncharacterized protein LOC103497847 isoform X1 [Cucumis melo]7.8e-3390.53Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIESQ WGLVPQG+
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM

XP_023547330.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo]1.3e-3287.37Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        MASL+AVSRLSSRLQSLAPK NKRS SSELSPFKS+CQSQPS ASTSR+ CTSRLP+ELSSQGSL+PLHSAIAAARLISSL+IESQ WGLVPQG+
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM

XP_038889658.1 uncharacterized protein LOC120079520 [Benincasa hispida]1.7e-3593.68Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        MASLK VSRLSSRLQSLAPKFNKRSS SELSPFKS CQSQPSTASTSRLPCTSRLPVELSSQGSL+PLHSAIAAARLISSLTIESQ WGLVPQG+
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM

TrEMBL top hitse value%identityAlignment
A0A0A0LKT5 Uncharacterized protein2.0e-3492.63Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        MASLKAVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIESQ WGLVPQG+
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM

A0A1S3C7U8 uncharacterized protein LOC103497847 isoform X13.8e-3390.53Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIESQ WGLVPQG+
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM

A0A1S3C7Z3 uncharacterized protein LOC103497847 isoform X21.4e-3287.76Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGMFCL
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIESQ WGLVPQ M  +
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGMFCL

A0A5A7V7B3 Protein NUCLEAR FUSION DEFECTIVE 67.3e-4589.92Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGMFCLSI
        MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPS ASTSRL CTSRLPVELSSQGSL+PLHSAIAAARLISSLTIESQ WGLVPQGMFCLS 
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGMFCLSI

Query:  FLHLVLVNADDSSLLYLLE
        FLHL LVNADDS LLY+LE
Subjt:  FLHLVLVNADDSSLLYLLE

A0A6J1G399 uncharacterized protein LOC1114503808.4e-3387.37Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        MASL+AVSRLSSRLQSLAPK NKRS SSELSPFKS CQSQPS ASTSR+ CTSRLP+ELSSQGSL+PLHSAIAAARLISSL+IESQ WGLVPQG+
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein4.6e-1556.7Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        MAS   + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR+  + RLPVELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQG+
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM

AT1G55205.2 unknown protein2.1e-1554.29Show/hide
Query:  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGMFCL
        MAS   + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR+  + RLPVELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQG    
Subjt:  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGMFCL

Query:  SIFLH
        S++L+
Subjt:  SIFLH

AT1G70350.1 unknown protein1.3e-0446.43Show/hide
Query:  SQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQG
        S  ST  + R    SR+PVELS+  SLIPLHS  A+A L S L++ +Q W  + +G
Subjt:  SQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQG

AT3G13674.1 unknown protein6.0e-1555.67Show/hide
Query:  MASLKAVSRLSSRLQSLAPKF-NKRSSSSEL-SPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        MAS + + R SSRL+SL     NK ++ S L SP KS   + PS+A++ RL  +SRLPVELS   S+IPLHSAIA++RL+SSL++ES+ WGLVPQG+
Subjt:  MASLKAVSRLSSRLQSLAPKF-NKRSSSSEL-SPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM

AT4G39300.1 unknown protein1.6e-0437.89Show/hide
Query:  ASLKAVSR-LSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM
        ++L A SR L SR +++  K      ++  SPF S  QS         +P  SR+   L S  ++IPLHSA+A+ARL SS+  +S  W L+ QG+
Subjt:  ASLKAVSR-LSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTTAAAGGCAGTCTCTCGGTTATCGTCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTG
TCAATCTCAGCCTTCCACAGCTTCTACATCGCGTCTTCCTTGCACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATACCATTACATAGCGCCATAGCTG
CAGCAAGATTGATTTCAAGTCTGACCATTGAATCTCAAAGATGGGGTTTGGTTCCACAGGGTATGTTTTGCTTAAGTATCTTCTTGCACTTGGTTCTAGTGAATGCCGAT
GATTCTTCATTATTGTATTTGCTTGAGGCATGTTGCGAAGGAAGTCTTCCAAATATCCAAACCAGGCTAAGTCAATCTAGACTGATGCTCAATTGCTTATCTTCGTATAA
GGCTCGGAGAGTGAAAATAGTGGGAATTTTTACAAAAACCAAGGTATTTCAATGCCTTTATGACGGCTTTGCTTTGCAGGAAGTTGTTCTCTGTAGTTTTCTGTTTATTG
ACAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCTTAAAGGCAGTCTCTCGGTTATCGTCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTG
TCAATCTCAGCCTTCCACAGCTTCTACATCGCGTCTTCCTTGCACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATACCATTACATAGCGCCATAGCTG
CAGCAAGATTGATTTCAAGTCTGACCATTGAATCTCAAAGATGGGGTTTGGTTCCACAGGGTATGTTTTGCTTAAGTATCTTCTTGCACTTGGTTCTAGTGAATGCCGAT
GATTCTTCATTATTGTATTTGCTTGAGGCATGTTGCGAAGGAAGTCTTCCAAATATCCAAACCAGGCTAAGTCAATCTAGACTGATGCTCAATTGCTTATCTTCGTATAA
GGCTCGGAGAGTGAAAATAGTGGGAATTTTTACAAAAACCAAGGTATTTCAATGCCTTTATGACGGCTTTGCTTTGCAGGAAGTTGTTCTCTGTAGTTTTCTGTTTATTG
ACAATTGA
Protein sequenceShow/hide protein sequence
MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSTASTSRLPCTSRLPVELSSQGSLIPLHSAIAAARLISSLTIESQRWGLVPQGMFCLSIFLHLVLVNAD
DSSLLYLLEACCEGSLPNIQTRLSQSRLMLNCLSSYKARRVKIVGIFTKTKVFQCLYDGFALQEVVLCSFLFIDN