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Clc11G02645 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G02645
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionArabinogalactan protein 22, putative
Genome locationClcChr11:2543418..2548488
RNA-Seq ExpressionClc11G02645
SyntenyClc11G02645
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]1.2e-1881.25Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MSS+KLTA P VGF+FLI+LQLA+GHSH ISPA  GPSNDGAAIDQGIAYVLLL+ALA+TYI+H
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

KAF9662510.1 hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]1.1e-1364.06Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        M+SM+L A PI+GFMFL LL+  +G     SPAP GPSNDG  IDQGIAYVLL++ALA+TY++H
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

KAG5225642.1 arabinogalactan peptide [Salix suchowensis]7.5e-1360.94Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        M SM+L A PI+GFMFL LL+  +G     SP P GPSNDG  IDQGIAY+LL++ALA+TY++H
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]8.2e-2087.5Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MSS+KLTA PIVGF+FLI+LQLA+GHSH ISPA AGPSNDGAAIDQGIAYVLLL+ALAVTYIVH
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

OAY53733.1 hypothetical protein MANES_03G019400v8 [Manihot esculenta]5.7e-1364.06Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MS MKL   PI+G +FL L+QL+YG     SPAP GPS+DG AIDQGIA++L+LVALAVTY++H
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

TrEMBL top hitse value%identityAlignment
A0A059CP27 Uncharacterized protein1.0e-1279.63Show/hide
Query:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        IVGFMFL LLQL YG S   SPAP GPSNDG AIDQGIAY LLLVALAVTY+ H
Subjt:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

A0A067KBQ4 Uncharacterized protein1.0e-1267.19Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MS M L A PI+GFMFL LLQL +G +   SPA  GPS+DG  IDQGIAYVL+LVALAVTY+ H
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

A0A0A0LIU0 Uncharacterized protein4.0e-2087.5Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MSS+KLTA PIVGF+FLI+LQLA+GHSH ISPA AGPSNDGAAIDQGIAYVLLL+ALAVTYIVH
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

A0A2C9W3S5 Uncharacterized protein2.8e-1364.06Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MS MKL   PI+G +FL L+QL+YG     SPAP GPS+DG AIDQGIA++L+LVALAVTY++H
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

A0A5A7V7C0 Putative Arabinogalactan protein 225.7e-1981.25Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        MSS+KLTA P VGF+FLI+LQLA+GHSH ISPA  GPSNDGAAIDQGIAYVLLL+ALA+TYI+H
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.2e-0746.03Show/hide
Query:  SSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        S   +T   +  F+F ++L LA   S  ++PAPA P++DG +IDQGIAY+L++VAL +TY++H
Subjt:  SSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

Q8L9T8 Arabinogalactan protein 415.7e-0857.41Show/hide
Query:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        IV  +F ILL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL +TY++H
Subjt:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

Q9FK16 Arabinogalactan protein 226.8e-0948.44Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        M+S+K     +  F+ + ++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA+TY +H
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

Q9M373 Arabinogalactan protein 209.2e-0641.38Show/hide
Query:  TAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        + A I  F F+  +   +  +  ++PAP+ P++DG +IDQGIAY+L++VAL +TY++H
Subjt:  TAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.5e-0846.03Show/hide
Query:  SSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        S   +T   +  F+F ++L LA   S  ++PAPA P++DG +IDQGIAY+L++VAL +TY++H
Subjt:  SSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

AT3G61640.1 arabinogalactan protein 206.5e-0741.38Show/hide
Query:  TAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        + A I  F F+  +   +  +  ++PAP+ P++DG +IDQGIAY+L++VAL +TY++H
Subjt:  TAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

AT5G24105.1 arabinogalactan protein 414.1e-0957.41Show/hide
Query:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        IV  +F ILL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL +TY++H
Subjt:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH

AT5G53250.1 arabinogalactan protein 224.8e-1048.44Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH
        M+S+K     +  F+ + ++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA+TY +H
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCGTAAAAACATGAGTTCCATGAAGCTTACCGCCGCTCCGATCGTCGGATTCATGTTCTTGATTCTTCTTCAATTGGCTTACGGTCACTCCCACCATATTTCTCC
GGCACCGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGGTTGCTCTTGCCGTTACTTACATCGTCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCGTAAAAACATGAGTTCCATGAAGCTTACCGCCGCTCCGATCGTCGGATTCATGTTCTTGATTCTTCTTCAATTGGCTTACGGTCACTCCCACCATATTTCTCC
GGCACCGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGGTTGCTCTTGCCGTTACTTACATCGTCCATTAA
Protein sequenceShow/hide protein sequence
MGRKNMSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIVH