; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G02740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G02740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionHeavy metal transport/detoxification superfamily protein
Genome locationClcChr11:2662309..2665403
RNA-Seq ExpressionClc11G02740
SyntenyClc11G02740
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006121 - Heavy metal-associated domain, HMA
IPR036163 - Heavy metal-associated domain superfamily
IPR044526 - Protein SODIUM POTASSIUM ROOT DEFECTIVE 1/2/3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030420.1 Protein SODIUM POTASSIUM ROOT DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-3566.15Show/hide
Query:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE
        +GIGKVFSCF N+ AS+SCF +E   E K PLM  Q  +S LLR  DVI H NQ      NPKVV LRVSMHCNGCARRVEK+I KI+GVDSY VD ER+
Subjt:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE

Query:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD
         VVVTGDV  FEV+QC+SKV+SVEILE ++
Subjt:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD

XP_008458177.1 PREDICTED: uncharacterized protein LOC103497691 [Cucumis melo]3.5e-4070.92Show/hide
Query:  MGIGKVFSCFTNT--SASTSC--FCLEIED------KHPLMAKQTASS--QLLRFKDVIPHQNQTL-ALHLNPKVVVLRVSMHCNGCARRVEKHISKIDG
        + IGKVFSCF NT  S+STSC  +  EIED      K PLMAKQT S+   LL FKDVI HQN+TL  L  NPKVV++RVSMHCNGCARRVEK ISKI G
Subjt:  MGIGKVFSCFTNT--SASTSC--FCLEIED------KHPLMAKQTASS--QLLRFKDVIPHQNQTL-ALHLNPKVVVLRVSMHCNGCARRVEKHISKIDG

Query:  VDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHRD
        V+S+ VDMERE VVVTGDVFPFEVM+CISKVKSVEILE +D
Subjt:  VDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHRD

XP_022946348.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita moschata]1.5e-3566.15Show/hide
Query:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE
        +GIGKVFSCF N+ AS+SCF +E   E K PLM  Q  +S LLR  DVI H NQ      NPKVV LRVSMHCNGCARRVEK+I KI+GVDSY VD ER+
Subjt:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE

Query:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD
         VVVTGDV  FEV+QC+SKV+SVEILE ++
Subjt:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD

XP_022999545.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita maxima]1.1e-3666.92Show/hide
Query:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE
        +GIGKVFSCF N+ AS+SCF +E   E K PLM  Q  +S LLRF DVI H NQ      NPKVV LRVSMHCNGCARRVEK+I KI+GVDS+ VD ER+
Subjt:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE

Query:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD
         VVVTGDV  FEV+QC+SKV+SVEILEH++
Subjt:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD

XP_031736582.1 uncharacterized protein LOC116402031 [Cucumis sativus]7.5e-4375Show/hide
Query:  MGIGKVFSCFTNTS-ASTSC--FCLEIED------KHPLMAKQTASS--QLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVD
        M IGKVFSCF NT+ +STSC  + LEIED      K PLM KQT S+   LL FKDVI HQN+TL L  NPKVVV+RVSMHCNGCARRVEKHISKI GV+
Subjt:  MGIGKVFSCFTNTS-ASTSC--FCLEIED------KHPLMAKQTASS--QLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVD

Query:  SYDVDMEREMVVVTGDVFPFEVMQCISKVKSVEILE
        S+ VDMERE VVVTGDVFPFEVMQCISKVKSVEILE
Subjt:  SYDVDMEREMVVVTGDVFPFEVMQCISKVKSVEILE

TrEMBL top hitse value%identityAlignment
A0A1S3C8H9 uncharacterized protein LOC1034976911.7e-4070.92Show/hide
Query:  MGIGKVFSCFTNT--SASTSC--FCLEIED------KHPLMAKQTASS--QLLRFKDVIPHQNQTL-ALHLNPKVVVLRVSMHCNGCARRVEKHISKIDG
        + IGKVFSCF NT  S+STSC  +  EIED      K PLMAKQT S+   LL FKDVI HQN+TL  L  NPKVV++RVSMHCNGCARRVEK ISKI G
Subjt:  MGIGKVFSCFTNT--SASTSC--FCLEIED------KHPLMAKQTASS--QLLRFKDVIPHQNQTL-ALHLNPKVVVLRVSMHCNGCARRVEKHISKIDG

Query:  VDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHRD
        V+S+ VDMERE VVVTGDVFPFEVM+CISKVKSVEILE +D
Subjt:  VDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHRD

A0A2N9H2C1 HMA domain-containing protein1.9e-3157.36Show/hide
Query:  MGIGKVFSCFTNTSASTSCFCLEIEDKH------PLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVD
        +  GKV  CF+ +S S+SCFC+   + H      PL+A     SQLLR KDV+   NQTLA  L PK+V+LRVSMHCNGCAR+VEKHISK++GV SY VD
Subjt:  MGIGKVFSCFTNTSASTSCFCLEIEDKH------PLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVD

Query:  MEREMVVVTGDVFPFEVMQCISKVKSVEI
        +E +MVVVTGD+ PFEV++ +SKVK+ E+
Subjt:  MEREMVVVTGDVFPFEVMQCISKVKSVEI

A0A5A7V1Y2 Copper-binding family protein1.7e-4070.92Show/hide
Query:  MGIGKVFSCFTNT--SASTSC--FCLEIED------KHPLMAKQTASS--QLLRFKDVIPHQNQTL-ALHLNPKVVVLRVSMHCNGCARRVEKHISKIDG
        + IGKVFSCF NT  S+STSC  +  EIED      K PLMAKQT S+   LL FKDVI HQN+TL  L  NPKVV++RVSMHCNGCARRVEK ISKI G
Subjt:  MGIGKVFSCFTNT--SASTSC--FCLEIED------KHPLMAKQTASS--QLLRFKDVIPHQNQTL-ALHLNPKVVVLRVSMHCNGCARRVEKHISKIDG

Query:  VDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHRD
        V+S+ VDMERE VVVTGDVFPFEVM+CISKVKSVEILE +D
Subjt:  VDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHRD

A0A6J1G3J1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X17.3e-3666.15Show/hide
Query:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE
        +GIGKVFSCF N+ AS+SCF +E   E K PLM  Q  +S LLR  DVI H NQ      NPKVV LRVSMHCNGCARRVEK+I KI+GVDSY VD ER+
Subjt:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE

Query:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD
         VVVTGDV  FEV+QC+SKV+SVEILE ++
Subjt:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD

A0A6J1KFP0 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X15.1e-3766.92Show/hide
Query:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE
        +GIGKVFSCF N+ AS+SCF +E   E K PLM  Q  +S LLRF DVI H NQ      NPKVV LRVSMHCNGCARRVEK+I KI+GVDS+ VD ER+
Subjt:  MGIGKVFSCFTNTSASTSCFCLE--IEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMERE

Query:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD
         VVVTGDV  FEV+QC+SKV+SVEILEH++
Subjt:  MVVVTGDVFPFEVMQCISKVKSVEILEHRD

SwissProt top hitse value%identityAlignment
B3H6D0 Heavy metal-associated isoprenylated plant protein 452.4e-0740.58Show/hide
Query:  HQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISK
        H N  L + L+  +V L V M C GC ++V + ISK+DGVD+ ++D++R+ V VTG V   EV++ + +
Subjt:  HQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISK

Q58FZ0 Protein SODIUM POTASSIUM ROOT DEFECTIVE 21.2e-1141.1Show/hide
Query:  QNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE
        + +T     + +VVVL+VS+HC GC  +V KH++++ GV S+++D   + V VTGD+ P E++  ISKVK+ +
Subjt:  QNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE

Q8LDS4 Protein SODIUM POTASSIUM ROOT DEFECTIVE 12.9e-1356.45Show/hide
Query:  KVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE
        +VVVLRVS+HC GCA +V+KH+SK+ GV SY++D   + V VTGDV P  V+  ISKVK+ +
Subjt:  KVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE

Q8RXH8 Protein SODIUM POTASSIUM ROOT DEFECTIVE 33.2e-1251.56Show/hide
Query:  KVVVLRVSMHCN--GCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE
        +VVVLRVS+HC+  GC  +V+KH+SK+ GV S+++D   + V VTGD+ P EV+ C+SKVK+ +
Subjt:  KVVVLRVSMHCN--GCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE

Q94BT9 Copper transport protein ATX13.1e-0743.86Show/hide
Query:  KVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISK
        + VVLRV+M C GC   V++ + K++GV+S+DVD++ + V V G+V P  V+Q ++K
Subjt:  KVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISK

Arabidopsis top hitse value%identityAlignment
AT2G37390.1 Chloroplast-targeted copper chaperone protein8.6e-1341.1Show/hide
Query:  QNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE
        + +T     + +VVVL+VS+HC GC  +V KH++++ GV S+++D   + V VTGD+ P E++  ISKVK+ +
Subjt:  QNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE

AT3G24450.1 Heavy metal transport/detoxification superfamily protein1.2e-2546.15Show/hide
Query:  IGKVFSCFTNTSASTSCFCL-------EIEDKHPLMAKQT-ASSQLLRFKDVI-PHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDV
        IG+V+ C    +   SCFCL       E  +K PL+   T  S +++R KDV+     QTLA HL PK+V L+VSMHC GCA++VEKHISK+DGV  Y V
Subjt:  IGKVFSCFTNTSASTSCFCL-------EIEDKHPLMAKQT-ASSQLLRFKDVI-PHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDV

Query:  DMEREMVVVTGDVFPFEVMQCISKVKSVEI
        ++E + VVV G++ P +V++ I KVK+ ++
Subjt:  DMEREMVVVTGDVFPFEVMQCISKVKSVEI

AT3G53530.1 Chloroplast-targeted copper chaperone protein2.3e-1351.56Show/hide
Query:  KVVVLRVSMHCN--GCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE
        +VVVLRVS+HC+  GC  +V+KH+SK+ GV S+++D   + V VTGD+ P EV+ C+SKVK+ +
Subjt:  KVVVLRVSMHCN--GCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE

AT5G02600.1 Heavy metal transport/detoxification superfamily protein2.1e-1456.45Show/hide
Query:  KVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE
        +VVVLRVS+HC GCA +V+KH+SK+ GV SY++D   + V VTGDV P  V+  ISKVK+ +
Subjt:  KVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE

AT5G02600.2 Heavy metal transport/detoxification superfamily protein2.1e-1456.45Show/hide
Query:  KVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE
        +VVVLRVS+HC GCA +V+KH+SK+ GV SY++D   + V VTGDV P  V+  ISKVK+ +
Subjt:  KVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFEVMQCISKVKSVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATTGGGAAAGTATTTTCGTGTTTCACAAATACAAGTGCTTCTACTTCCTGCTTCTGCTTGGAAATTGAAGACAAACACCCATTAATGGCGAAACAAACAGCTTC
ATCTCAGCTTCTCAGATTCAAAGATGTGATTCCTCATCAAAACCAAACCCTCGCTCTTCATTTGAACCCCAAGGTGGTGGTGCTAAGGGTGTCGATGCATTGCAATGGCT
GTGCCAGAAGGGTTGAGAAGCACATCTCCAAGATAGATGGTGTGGACTCATATGATGTAGATATGGAAAGGGAGATGGTGGTTGTTACTGGAGATGTTTTTCCTTTTGAA
GTCATGCAATGCATATCTAAAGTGAAAAGTGTAGAGATTCTCGAGCATCGAGATTGA
mRNA sequenceShow/hide mRNA sequence
CAGAAGTGAGTTTGAGGAGAGAAGGGAGAGAGCGTTGGGAACGGGAAAACTGGTGATGGGCATTGGGAAAGTATTTTCGTGTTTCACAAATACAAGTGCTTCTACTTCCT
GCTTCTGCTTGGAAATTGAAGACAAACACCCATTAATGGCGAAACAAACAGCTTCATCTCAGCTTCTCAGATTCAAAGATGTGATTCCTCATCAAAACCAAACCCTCGCT
CTTCATTTGAACCCCAAGGTGGTGGTGCTAAGGGTGTCGATGCATTGCAATGGCTGTGCCAGAAGGGTTGAGAAGCACATCTCCAAGATAGATGGTGTGGACTCATATGA
TGTAGATATGGAAAGGGAGATGGTGGTTGTTACTGGAGATGTTTTTCCTTTTGAAGTCATGCAATGCATATCTAAAGTGAAAAGTGTAGAGATTCTCGAGCATCGAGATT
GAACACGAAGTATTTTGTTTATGGTTATGAATTTGCTAACGTATAAACCTGTCTAATAATAATTTTGTTTTTAGTTTTCTAATTTTTAGATTTATATTTAT
Protein sequenceShow/hide protein sequence
MGIGKVFSCFTNTSASTSCFCLEIEDKHPLMAKQTASSQLLRFKDVIPHQNQTLALHLNPKVVVLRVSMHCNGCARRVEKHISKIDGVDSYDVDMEREMVVVTGDVFPFE
VMQCISKVKSVEILEHRD