; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G02880 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G02880
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRRM domain-containing protein
Genome locationClcChr11:2829810..2836198
RNA-Seq ExpressionClc11G02880
SyntenyClc11G02880
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK10694.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]2.0e-16690.46Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDV+WERDRDRGRDYDHDR+RHRGRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HD KLNHDQDWEKDHG D SGGG
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR
        GID  DDYDKSL+ DRDQ+ RRDNGLTIEGRTARDLSSDSSDDYIHEL+EQL +STERLEELRKE+SQ+EERSGEK KLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

XP_004139331.2 U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus]1.8e-16286.67Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDVSWERDRDRGRDYDHDR+RHRGRNNDWSRD DRSREHDLDKERGY HSQDRDLP+D+ LDR+PELEKTSKDNEKVHD KLNHDQDWEKDHG D SGG 
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDY--------------DKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKK
        GID  DDY              DKSL+ DRDQ+ RRDNGLTIEGRTARDLSSDSSDDYIHEL+EQL +STERLEELRKE+SQ+EERSGEK KLV+ELQKK
Subjt:  GIDNIDDY--------------DKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKK

Query:  AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Subjt:  AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

XP_008457973.1 PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo]2.2e-16589.88Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDV+WERDRDRGRDYDHDR+RHRGRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HD KLNHDQDWEKDHG D SGGG
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR
        GID  DDYDKSL+ DRDQ+ RRDN LTIEGRTARDLSSDSSDDYIHEL+EQL +STERLEELRKE+SQ+EERSGEK KLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

XP_023547216.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]1.0e-16289.02Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +RGGGRFGRESNRFDVE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDV+WERDRDRGRDY+HDR+R RGRNNDWSR+RDRSREHDLDKER Y HSQDRDLPKD LLDR+PELEK  K NE+  D KL+H QDWEKDH  DW+GGG
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR
        GIDN DDYDKSL +DRDQLSRRDNGL IEGRTAR+LSSDSSDDYIHEL+EQL +STER EELRKEISQ+EER+GEKGKLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        SSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVEST IESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

XP_038889756.1 serine/threonine-protein kinase prpf4B [Benincasa hispida]3.7e-16891.91Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGR+IEGRVVRVNGVKSR GGRFGRE NRFDVE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDVSWERDRDRGRDYDHDR+RHRGRNNDWSRDRDRSREHDLDKERGY HSQD D PKDKLLDRDPELEK+SKDNEKVHD KLNHDQD EK+HG DW GGG
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR
        GIDN DDY+KSL+ DR+QLSRRDNGLT EGRTARDLSSDSSDDYIHEL+EQL +STERLEELRKE+SQ+EERSGEK KLVIELQKKAKKLEDALISAKKR
Subjt:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        SSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVEST IESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

TrEMBL top hitse value%identityAlignment
A0A0A0LIV9 RRM domain-containing protein8.6e-16386.67Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDVSWERDRDRGRDYDHDR+RHRGRNNDWSRD DRSREHDLDKERGY HSQDRDLP+D+ LDR+PELEKTSKDNEKVHD KLNHDQDWEKDHG D SGG 
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDY--------------DKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKK
        GID  DDY              DKSL+ DRDQ+ RRDNGLTIEGRTARDLSSDSSDDYIHEL+EQL +STERLEELRKE+SQ+EERSGEK KLV+ELQKK
Subjt:  GIDNIDDY--------------DKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKK

Query:  AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Subjt:  AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

A0A1S3C6W1 zinc finger CCCH domain-containing protein 251.1e-16589.88Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDV+WERDRDRGRDYDHDR+RHRGRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HD KLNHDQDWEKDHG D SGGG
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR
        GID  DDYDKSL+ DRDQ+ RRDN LTIEGRTARDLSSDSSDDYIHEL+EQL +STERLEELRKE+SQ+EERSGEK KLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

A0A5A7V7D5 Zinc finger CCCH domain-containing protein 251.1e-16589.88Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDV+WERDRDRGRDYDHDR+RHRGRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HD KLNHDQDWEKDHG D SGGG
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR
        GID  DDYDKSL+ DRDQ+ RRDN LTIEGRTARDLSSDSSDDYIHEL+EQL +STERLEELRKE+SQ+EERSGEK KLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

A0A5D3CHM1 Zinc finger CCCH domain-containing protein 259.8e-16790.46Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDV+WERDRDRGRDYDHDR+RHRGRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HD KLNHDQDWEKDHG D SGGG
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR
        GID  DDYDKSL+ DRDQ+ RRDNGLTIEGRTARDLSSDSSDDYIHEL+EQL +STERLEELRKE+SQ+EERSGEK KLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

A0A6J1G3E0 U1 small nuclear ribonucleoprotein 70 kDa1.1e-16289.02Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +RGGGRFGRESNRFDVE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG
        RDV+WERDRDRGRDY+HDR+R RGRNNDWSR+RDRSREHDLDKER Y HSQDRDLPKD LLDR+PELEK  K NE+  D KL+H QDWEKDH  DW+GGG
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGG

Query:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR
        GIDN DDYDKSL +DRDQLSRRDNGL IEGRTAR+LSSDSSDDYIHEL+EQL +STER EELRKEISQ+EER+GEKGKLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        SSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVEST IESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B1.1e-1033.67Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------------
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAIK M GR +  +V+ VN  + + GG                
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------------

Query:  FGRESNRFDVERDVSWERD---------------RDRGRDYDHDRHRHRGRNNDWSRDRDRSREHD------LDKERGYGHSQDRDLPKDKLLDRD
         G E   F   R   W RD                 R R  D D HR R  + D  R+R+R RE D       D++ G    +DR    DK   RD
Subjt:  FGRESNRFDVERDVSWERD---------------RDRGRDYDHDRHRHRGRNNDWSRDRDRSREHD------LDKERGYGHSQDRDLPKDKLLDRD

Q18409 Probable splicing factor, arginine/serine-rich 63.5e-1236.47Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRGGGR---------FGRE
        D+ +YVGGLP DAT   L  IFD +G +  V +      R   + FV + + R A DA++ +DG  I G   RV    G +  GGGR          GR+
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRGGGR---------FGRE

Query:  SNRFDVERDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDR
         + +  +R  S  R RDRGRD   DR R R R+    R R+RSRE +  + R     Q+RD    K   R
Subjt:  SNRFDVERDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDR

Q28IQ9 Cold-inducible RNA-binding protein4.7e-0935.9Show/hide
Query:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-TTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVN--GVKS---RGGGRFGRESNR--
        D+  ++VGGL ++ TE+SL ++F  YG V  V ++ DR + R + +GFVTF NP  A DA+  M+G++++GR +RV+  G  S   RGG R G    R  
Subjt:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-TTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVN--GVKS---RGGGRFGRESNR--

Query:  FDVERDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQD
        F   R      DR  G       +R  G  +  SRD    R H    +R  G  +D
Subjt:  FDVERDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQD

Q66II8 U1 small nuclear ribonucleoprotein 70 kDa8.1e-0926.92Show/hide
Query:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR----------GGGRFGR
        D   +++V  + YD TE  LRR F++YG +  + ++ N R+ + + Y F+ + + R    A K  DG+ I+GR V V+  + R          GGG  G 
Subjt:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR----------GGGRFGR

Query:  ESNRFDVERDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDH
             DV    S   D  R  + D DR R R R       R+RSRE D ++ER    S++R   + +   R+ E  K S++  +  D   + D+D EKD 
Subjt:  ESNRFDVERDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDH

Query:  GEDWSGGGGIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGK
         +D             ++  E DRD+  + D    +EG     +     D    +    LG+    L++  +E ++  +R  ++ K
Subjt:  GEDWSGGGGIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGK

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial4.9e-1448.28Show/hide
Query:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-GGGRFG
        S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN    R  GG FG
Subjt:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-GGGRFG

Arabidopsis top hitse value%identityAlignment
AT4G39260.1 cold, circadian rhythm, and RNA binding 11.9e-1343.37Show/hide
Query:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFG
        +VGGL +   ++ L+R F  +G V+  KIINDR + R + +GFVTF + ++  DAI++M+G+ ++GRV+ VN  +SRG G  G
Subjt:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFG

AT4G39260.2 cold, circadian rhythm, and RNA binding 11.9e-1343.37Show/hide
Query:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFG
        +VGGL +   ++ L+R F  +G V+  KIINDR + R + +GFVTF + ++  DAI++M+G+ ++GRV+ VN  +SRG G  G
Subjt:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFG

AT4G39260.3 cold, circadian rhythm, and RNA binding 11.9e-1343.37Show/hide
Query:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFG
        +VGGL +   ++ L+R F  +G V+  KIINDR + R + +GFVTF + ++  DAI++M+G+ ++GRV+ VN  +SRG G  G
Subjt:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFG

AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-5442.53Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE
        MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDR+ RGKCYGFVTF+N RSA DAI+DMDG++I GR VRVN V +R GGR      R  ++
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVE

Query:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHD-LDKERGYGHSQDRDLPKD-KLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSG
            W+R  DR  D +++R R+  R+ +  R +DR ++H  ++KER Y HS D +   D  ++DR+   E+    +E           DW  D       
Subjt:  RDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHD-LDKERGYGHSQDRDLPKD-KLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSG

Query:  GGGIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAK
        G GI+       S    R Q ++R++   ++G   RD  S+SS D  H+++E L    +  E LR E+  MEER   K  +  ELQKK+K+LED LI+ K
Subjt:  GGGIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQMEERSGEKGKLVIELQKKAKKLEDALISAK

Query:  KRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG
        K  S R+ +L KLHKS+  V++ ++ LK  EQELQ LV S   E   G
Subjt:  KRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

AT5G61030.1 glycine-rich RNA-binding protein 33.5e-1548.28Show/hide
Query:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-GGGRFG
        S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN    R  GG FG
Subjt:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-GGGRFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAGCAAGTGTCGAGCAATGCTAGACATGGGTGCTGTGGAGATGAGGTGGTTGCGCTGGTTTTCGCGGTGGCCGTCGCTATGAGCAAAAGCGATGTCGAGTTTAA
CATTGGGAAAGGGAGTCCAGTAGTGTTCTTCTCGACTTTTTTCATTCTCCTCCGAGATTGGATTTTCACGGTGGCCATGACGGTGGACGACGATAGCTCGATATACGTCG
GCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTACTACTAGGGGAAAGTGC
TATGGCTTTGTTACCTTTACAAACCCCCGATCCGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGTCGGGTCGTCAGAGTTAATGGAGTGAAGTCTAG
AGGTGGTGGAAGGTTTGGTAGAGAAAGTAACCGGTTCGACGTAGAGAGGGATGTGAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGACATCGTC
ACAGAGGTAGAAATAATGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGGATATGGGCATTCACAAGATCGTGATCTGCCAAAGGAT
AAATTGTTGGATAGGGATCCGGAGTTGGAAAAAACGTCTAAGGATAATGAGAAGGTACATGACTCGAAGTTGAACCACGATCAAGATTGGGAAAAAGACCATGGTGAAGA
TTGGAGTGGAGGTGGAGGCATTGATAACATTGATGATTATGATAAAAGCCTTGAAACTGATAGAGATCAACTCTCAAGGAGAGATAACGGTCTTACAATTGAAGGTCGAA
CTGCTCGGGATCTTTCATCTGATTCCAGTGATGATTATATCCATGAATTAAGGGAACAACTGGGGATGTCAACAGAAAGATTGGAAGAACTTAGAAAAGAGATTTCTCAA
ATGGAGGAGAGGTCAGGAGAGAAAGGAAAACTTGTAATTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCA
GATGCAGTTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAGCCAGTGAACAAGAACTTCAGGCTCTGGTTGAATCAACCACAATAG
AGAGTGATGTTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAGCAAGTGTCGAGCAATGCTAGACATGGGTGCTGTGGAGATGAGGTGGTTGCGCTGGTTTTCGCGGTGGCCGTCGCTATGAGCAAAAGCGATGTCGAGTTTAA
CATTGGGAAAGGGAGTCCAGTAGTGTTCTTCTCGACTTTTTTCATTCTCCTCCGAGATTGGATTTTCACGGTGGCCATGACGGTGGACGACGATAGCTCGATATACGTCG
GCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTACTACTAGGGGAAAGTGC
TATGGCTTTGTTACCTTTACAAACCCCCGATCCGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGTCGGGTCGTCAGAGTTAATGGAGTGAAGTCTAG
AGGTGGTGGAAGGTTTGGTAGAGAAAGTAACCGGTTCGACGTAGAGAGGGATGTGAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGACATCGTC
ACAGAGGTAGAAATAATGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGGATATGGGCATTCACAAGATCGTGATCTGCCAAAGGAT
AAATTGTTGGATAGGGATCCGGAGTTGGAAAAAACGTCTAAGGATAATGAGAAGGTACATGACTCGAAGTTGAACCACGATCAAGATTGGGAAAAAGACCATGGTGAAGA
TTGGAGTGGAGGTGGAGGCATTGATAACATTGATGATTATGATAAAAGCCTTGAAACTGATAGAGATCAACTCTCAAGGAGAGATAACGGTCTTACAATTGAAGGTCGAA
CTGCTCGGGATCTTTCATCTGATTCCAGTGATGATTATATCCATGAATTAAGGGAACAACTGGGGATGTCAACAGAAAGATTGGAAGAACTTAGAAAAGAGATTTCTCAA
ATGGAGGAGAGGTCAGGAGAGAAAGGAAAACTTGTAATTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCA
GATGCAGTTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAGCCAGTGAACAAGAACTTCAGGCTCTGGTTGAATCAACCACAATAG
AGAGTGATGTTGGATGAAGTATGAAGTTCCAGCCAATTGCAATTCATGTCATAAGCCGAAGAGGCTGCATCGTGCAATTTTATTGGCATGAAACTCTTCGTCGTGGGTAT
TCATTGTCTTTCTGTTCATACTGATGACAAGTTGTAGAATTCGTCTGTAACCTAATTTTTCCCAAGAAAGATTAAGCTGTCTATTTATTTAATGGTACGTTCACAATCAA
CTATGCACATGTTTTTACTTGCTTTTAGCTTCTGCAGAGGTTCATCTCACTTTTGTCAAGTTAGATAGGCAAAGATATATTGAAAATTGATTCTAACATCCAAGTAGTTT
TTTCCAGCTTGCCTGAAGTTCCTTCCCATGAAATGTAATTTGAAAGCTTAGGTTGTAATCCTTTTCCAAGAACATTTCGATATCATTAAATATCATCCCCACTTATCTTT
T
Protein sequenceShow/hide protein sequence
MDEQVSSNARHGCCGDEVVALVFAVAVAMSKSDVEFNIGKGSPVVFFSTFFILLRDWIFTVAMTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKC
YGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRHRHRGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKD
KLLDRDPELEKTSKDNEKVHDSKLNHDQDWEKDHGEDWSGGGGIDNIDDYDKSLETDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLGMSTERLEELRKEISQ
MEERSGEKGKLVIELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG