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Clc11G02890 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G02890
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationClcChr11:2836056..2836289
RNA-Seq ExpressionClc11G02890
SyntenyClc11G02890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RXI05813.1 hypothetical protein DVH24_017855 [Malus domestica]6.4e-1357.3Show/hide
Query:  MAVPPSLQHISP----------TLSTKNLIATATAKTSATTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI P          T  TK     ATA  +  T +P   HPCL LLD CS++SELKQIHAQLLRTG FFD FTASK+VAFS
Subjt:  MAVPPSLQHISP----------TLSTKNLIATATAKTSATTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

TQD83682.1 hypothetical protein C1H46_030757 [Malus baccata]2.9e-1360.67Show/hide
Query:  MAVPPSLQHISPTLS-------TKNLIATATAKTSA---TTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI P  S       TK   ATA A T+A    T +P   HPCL LLD CS++SELKQIHAQLLRTG FFD FTASK+VAFS
Subjt:  MAVPPSLQHISPTLS-------TKNLIATATAKTSA---TTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

XP_004288819.2 PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Fragaria vesca subsp. vesca]2.2e-1362.35Show/hide
Query:  MAVPPSLQHISP------TLSTKNLIATATAKTSA--TTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI P       L  K    TAT  T+A  T  + QHPCL LLD CSS+SELKQIHAQLLR G FFD FTASKIVAFS
Subjt:  MAVPPSLQHISP------TLSTKNLIATATAKTSA--TTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

XP_008390133.3 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Malus domestica]6.4e-1359.55Show/hide
Query:  MAVPPSLQHISPTLS-------TKNLIATATAKTSA---TTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI P  +       TK   ATA A T+A    T +P   HPCL LLD CS++SELKQIHAQLLRTG FFD FTASK+VAFS
Subjt:  MAVPPSLQHISPTLS-------TKNLIATATAKTSA---TTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

XP_024182101.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Rosa chinensis]2.2e-1360.92Show/hide
Query:  MAVPPSLQHISPTLSTKN-LIATATAKTSATTS---------SPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI P     N L+   TA T+ATT+         + QHPCL LLD CSS+SELKQIHAQLLR G FFD FTASKIVAFS
Subjt:  MAVPPSLQHISPTLSTKN-LIATATAKTSATTS---------SPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

TrEMBL top hitse value%identityAlignment
A0A2P6RJ71 Putative tetratricopeptide-like helical domain, DYW domain-containing protein1.1e-1360.92Show/hide
Query:  MAVPPSLQHISPTLSTKN-LIATATAKTSATTS---------SPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI P     N L+   TA T+ATT+         + QHPCL LLD CSS+SELKQIHAQLLR G FFD FTASKIVAFS
Subjt:  MAVPPSLQHISPTLSTKN-LIATATAKTSATTS---------SPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

A0A498KKF2 DYW_deaminase domain-containing protein3.1e-1357.3Show/hide
Query:  MAVPPSLQHISP----------TLSTKNLIATATAKTSATTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI P          T  TK     ATA  +  T +P   HPCL LLD CS++SELKQIHAQLLRTG FFD FTASK+VAFS
Subjt:  MAVPPSLQHISP----------TLSTKNLIATATAKTSATTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

A0A540LBP5 DYW_deaminase domain-containing protein1.4e-1360.67Show/hide
Query:  MAVPPSLQHISPTLS-------TKNLIATATAKTSA---TTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI P  S       TK   ATA A T+A    T +P   HPCL LLD CS++SELKQIHAQLLRTG FFD FTASK+VAFS
Subjt:  MAVPPSLQHISPTLS-------TKNLIATATAKTSA---TTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

A0A5E4GQU3 PREDICTED: pentatricopeptide9.0e-1356.99Show/hide
Query:  MAVPPSLQHI-------SPTLSTKNLIATA-------TAKTSATTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI       +P L  K   +TA       TA  ++ T+SP   HPCLALLD CS++SELKQIHAQLLRTG FFD FTASK+VAFS
Subjt:  MAVPPSLQHI-------SPTLSTKNLIATA-------TAKTSATTSSP--QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

A0A6P5SU63 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isoform X15.3e-1355.91Show/hide
Query:  MAVPPSLQHI-------SPTLSTKNLIATATAKTSATTSS---------PQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        MA P SL HI       +P L  K   +TA A T  TT++           HPCLALLD CS++SELKQIHAQLLRTG FFD FTASK+VAFS
Subjt:  MAVPPSLQHI-------SPTLSTKNLIATATAKTSATTSS---------PQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

SwissProt top hitse value%identityAlignment
O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic3.3e-0439.58Show/hide
Query:  TTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        TT++ +   ++L++ C S+ +LKQ H  ++RTG F DP++ASK+ A +
Subjt:  TTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

Q9FG16 Pentatricopeptide repeat-containing protein At5g065403.3e-0456.1Show/hide
Query:  QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVA
        +HP LALL +CSS S+LK IH  LLRT    D F AS+++A
Subjt:  QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVA

Arabidopsis top hitse value%identityAlignment
AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-0539.58Show/hide
Query:  TTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        TT++ +   ++L++ C S+ +LKQ H  ++RTG F DP++ASK+ A +
Subjt:  TTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.5e-0439.71Show/hide
Query:  ISPTLSTKNLIATATAKTSATTSSPQHPCLALLDT-CSSISELKQIHAQLLRTGPFFDPFTASKIVAF
        +SPT+ + + +      +S + S   +  L L+DT CS++ ELKQIHA L++TG   D  TAS+++AF
Subjt:  ISPTLSTKNLIATATAKTSATTSSPQHPCLALLDT-CSSISELKQIHAQLLRTGPFFDPFTASKIVAF

AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein8.9e-0536.76Show/hide
Query:  ISPTLSTKNLIATATAKTSATTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS
        I P      L+     K  +  SS   P L+  +   S++E++Q HA +L+TG F D F+ASK+VAF+
Subjt:  ISPTLSTKNLIATATAKTSATTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS

AT5G06540.1 Pentatricopeptide repeat (PPR) superfamily protein2.3e-0556.1Show/hide
Query:  QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVA
        +HP LALL +CSS S+LK IH  LLRT    D F AS+++A
Subjt:  QHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTCCTCCATCGCTCCAACACATCAGCCCAACCTTATCCACAAAAAACCTCATAGCGACGGCCACCGCGAAAACCAGCGCAACCACCTCATCTCCACAGCACCC
ATGTCTAGCATTGCTCGACACTTGCTCATCCATATCGGAACTCAAGCAAATTCATGCCCAACTCTTGAGAACTGGCCCTTTCTTCGACCCATTTACCGCCAGCAAAATTG
TGGCCTTCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTCCTCCATCGCTCCAACACATCAGCCCAACCTTATCCACAAAAAACCTCATAGCGACGGCCACCGCGAAAACCAGCGCAACCACCTCATCTCCACAGCACCC
ATGTCTAGCATTGCTCGACACTTGCTCATCCATATCGGAACTCAAGCAAATTCATGCCCAACTCTTGAGAACTGGCCCTTTCTTCGACCCATTTACCGCCAGCAAAATTG
TGGCCTTCTCTTGA
Protein sequenceShow/hide protein sequence
MAVPPSLQHISPTLSTKNLIATATAKTSATTSSPQHPCLALLDTCSSISELKQIHAQLLRTGPFFDPFTASKIVAFS