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Clc11G03030 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G03030
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationClcChr11:2953739..2958203
RNA-Seq ExpressionClc11G03030
SyntenyClc11G03030
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139322.1 zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus]1.2e-6686.26Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY+  N      TDEVLAGDWYCNCGAHNYASRS+CY+C  NAYK+ DIGALPGWKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDW

Query:  ICTRIGCETHNYASRMECYKCKTPRNFGGAV
        IC+RIGCETHNYASRMECYKCK PR+FGGAV
Subjt:  ICTRIGCETHNYASRMECYKCKTPRNFGGAV

XP_008457786.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo]4.0e-6787.02Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY+  N      TDEVLAGDWYCNCGAHNYASRS+CYRC  NAYK+ DIGALPGWKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDW

Query:  ICTRIGCETHNYASRMECYKCKTPRNFGGAV
        IC+RIGCETHNYASRMECYKCKTPR+FGGAV
Subjt:  ICTRIGCETHNYASRMECYKCKTPRNFGGAV

XP_022966014.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]2.3e-6789.6Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIG
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE+      EVLAGDWYC+CGAHNYASRS+CYRCNAYK+ DIGALPGWKSGDWIC RIG
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIG

Query:  CETHNYASRMECYKCKTPRNFGGAV
        CETHNYASRMECYKCKTPR+FGGAV
Subjt:  CETHNYASRMECYKCKTPRNFGGAV

XP_023538268.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo]6.8e-6788.8Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIG
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+      EVLAGDWYC+CGAHNYASRS+CYRCNAYK+ DIGALPGWKSGDWIC RIG
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIG

Query:  CETHNYASRMECYKCKTPRNFGGAV
        CETHNYASRMECYKCKTPR+FGGAV
Subjt:  CETHNYASRMECYKCKTPRNFGGAV

XP_038890693.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]7.8e-7192.06Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRI
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+ Y +YI++KTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKT D+GALPGWKSGDWICTRI
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRI

Query:  GCETHNYASRMECYKCKTPRNFGGAV
        GCETHNYASRMECYKCK PR+FGGAV
Subjt:  GCETHNYASRMECYKCKTPRNFGGAV

TrEMBL top hitse value%identityAlignment
A0A0A0LIX1 Uncharacterized protein3.1e-6585.94Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY+  N      TDEVLAGDWYCNCGAHNYASRS+CY+C  NAYK+ DIGALPGWKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDW

Query:  ICTRIGCETHNYASRMECYKCKTPRNFG
        IC+RIGCETHNYASRMECYKCK PR+FG
Subjt:  ICTRIGCETHNYASRMECYKCKTPRNFG

A0A1S3C6B6 uncharacterized RNA-binding protein C17H9.04c1.9e-6787.02Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY+  N      TDEVLAGDWYCNCGAHNYASRS+CYRC  NAYK+ DIGALPGWKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDW

Query:  ICTRIGCETHNYASRMECYKCKTPRNFGGAV
        IC+RIGCETHNYASRMECYKCKTPR+FGGAV
Subjt:  ICTRIGCETHNYASRMECYKCKTPRNFGGAV

A0A6J1CPG4 uncharacterized RNA-binding protein C17H9.04c-like1.5e-6485.94Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHD-IGALPGWKSGDWICT
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEY       +LAGDWYCNCGAHNYASRS CYRC  NA+K  D IGALPGWKSGDWICT
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRC--NAYKTHD-IGALPGWKSGDWICT

Query:  RIGCETHNYASRMECYKCKTPRNFGGAV
        RIGCE HNYASRMECYKC TPR+FGGAV
Subjt:  RIGCETHNYASRMECYKCKTPRNFGGAV

A0A6J1FCS1 zinc finger Ran-binding domain-containing protein 2-like9.6e-6788.8Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIG
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+      EVLAGDWYC+CGAHNYASRS+CYRCNAYK+ DI ALPGWKSGDWIC RIG
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIG

Query:  CETHNYASRMECYKCKTPRNFGGAV
        CETHNYASRMECYKCKTPRNFGGAV
Subjt:  CETHNYASRMECYKCKTPRNFGGAV

A0A6J1HSH3 zinc finger Ran-binding domain-containing protein 2-like1.1e-6789.6Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIG
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE+      EVLAGDWYC+CGAHNYASRS+CYRCNAYK+ DIGALPGWKSGDWIC RIG
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIG

Query:  CETHNYASRMECYKCKTPRNFGGAV
        CETHNYASRMECYKCKTPR+FGGAV
Subjt:  CETHNYASRMECYKCKTPRNFGGAV

SwissProt top hitse value%identityAlignment
O95218 Zinc finger Ran-binding domain-containing protein 25.3e-0632.11Show/hide
Query:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI
        S  N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+             A DW C  C   N+A RS C  CN  K   +
Subjt:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI

Query:  GALPGWKSG
            G+  G
Subjt:  GALPGWKSG

Q19QU3 Zinc finger Ran-binding domain-containing protein 25.3e-0632.11Show/hide
Query:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI
        S  N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+             A DW C  C   N+A RS C  CN  K   +
Subjt:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI

Query:  GALPGWKSG
            G+  G
Subjt:  GALPGWKSG

Q5R580 Zinc finger Ran-binding domain-containing protein 25.3e-0632.11Show/hide
Query:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI
        S  N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+             A DW C  C   N+A RS C  CN  K   +
Subjt:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI

Query:  GALPGWKSG
            G+  G
Subjt:  GALPGWKSG

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 21.1e-0633.03Show/hide
Query:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI
        S  N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+             A DW C  CG  N+A RS C  CN  K   +
Subjt:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI

Query:  GALPGWKSG
            G+  G
Subjt:  GALPGWKSG

Q9R020 Zinc finger Ran-binding domain-containing protein 25.3e-0632.11Show/hide
Query:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI
        S  N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+             A DW C  C   N+A RS C  CN  K   +
Subjt:  SKMNMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------------LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDI

Query:  GALPGWKSG
            G+  G
Subjt:  GALPGWKSG

Arabidopsis top hitse value%identityAlignment
AT1G55040.1 zinc finger (Ran-binding) family protein3.2e-0632.58Show/hide
Query:  PKYGGPDPTTYEYINAKTDEVLAGDWYC-NCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPR
        PK   P PT    +     E+  GDW C  C   N+A  + C +C+A K      LP    G+W C    C   NY   M C+ C   R
Subjt:  PKYGGPDPTTYEYINAKTDEVLAGDWYC-NCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPR

AT2G17975.1 zinc finger (Ran-binding) family protein5.0e-1525.64Show/hide
Query:  KQPSSLKNNFKEEGSKMNMNWSG--GDWMCGVCEHVNFKKREACQRCGYPK--------------------YGGPDPTTYE-------YINAKTD-----
        KQP  + +N     +  N  W    GDW+C  C + N+  RE C++CG  K                    Y    P +++       + NA        
Subjt:  KQPSSLKNNFKEEGSKMNMNWSG--GDWMCGVCEHVNFKKREACQRCGYPK--------------------YGGPDPTTYE-------YINAKTD-----

Query:  EVLAGDWYCNCGAHNYASRSTCYRCNA-----------------------------------------------------------YKTHDIGALPG---
        E  +GDW C CG HNY+SR  C +CN                                                             + H   AL G   
Subjt:  EVLAGDWYCNCGAHNYASRSTCYRCNA-----------------------------------------------------------YKTHDIGALPG---

Query:  --WKSGDWICTRIGCETHNYASRMECYKCKTPRN
          W+ GDW+CT   C+ HNYASR EC +CKT R+
Subjt:  --WKSGDWICTRIGCETHNYASRMECYKCKTPRN

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein7.6e-4855.71Show/hide
Query:  MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYC---NCGAHNYASRSTCYRCN----------------AYKTHDI
        M+W+GGDW+CG C+H NFKKRE+CQ+CGYPK+GG D +TY Y      EV+AGDWYC   NCG+HNYASR++CYRC                 AY     
Subjt:  MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYC---NCGAHNYASRSTCYRCN----------------AYKTHDI

Query:  GALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRNFGG
           PGWK+GDW+C R+GC  HNYASR EC+KCKT R++GG
Subjt:  GALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRNFGG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein9.9e-3240.38Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYINAKTDEVLAGDWYC---NCGAHNYASRSTCYRCNAYKTH----------
        GDW C  C H+NF++R++CQRCG             +  +GG   + + +      +V  GDWYC   NCG HN+ASRSTC++C  +K            
Subjt:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYINAKTDEVLAGDWYC---NCGAHNYASRSTCYRCNAYKTH----------

Query:  --------DI--------GALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRNF
                DI        G    WKSGDWICTRIGC  HN+ASRMEC++C  PR+F
Subjt:  --------DI--------GALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRNF

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein2.5e-2736.08Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPD----------PTTYEYINAKTDEVLAGDWYCN---CGAHNYASRSTCYRCNAYKTH-------------
        GDW C +C H+NF++R++CQRC  P+ GG            P +  +      +V  GDWYCN   CG HN+A+RS+C++C A K               
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPD----------PTTYEYINAKTDEVLAGDWYCN---CGAHNYASRSTCYRCNAYKTH-------------

Query:  --DIGALPG------------------WKSGDWICTRIGCETHNYASRMECYKCKTPR
          ++G   G                  WKSGDWIC R GC  HN+ASR EC++C  P+
Subjt:  --DIGALPG------------------WKSGDWICTRIGCETHNYASRMECYKCKTPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACGCCATGTTTGGTGCAGGCCCTTGGCCTTCAAACAACCCTCAAGTCTTAAAAACAACTTCAAGGAAGAAGGATCAAAGATGAATATGAATTGGTCAGGAGGTGA
TTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCAAAATATGGTGGCCCTGACCCAACAACATATGAATACATTA
ATGCTAAAACAGATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCACATAATTATGCCAGTAGATCAACTTGTTATAGGTGTAATGCCTATAAGACTCATGAT
ATTGGTGCTTTGCCTGGTTGGAAATCTGGTGATTGGATCTGCACTAGAATAGGATGTGAAACTCACAATTACGCTAGTAGAATGGAATGCTACAAATGCAAAACTCCAAG
AAATTTTGGTGGAGCTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAACGCCATGTTTGGTGCAGGCCCTTGGCCTTCAAACAACCCTCAAGTCTTAAAAACAACTTCAAGGAAGAAGGATCAAAGATGAATATGAATTGGTCAGGAGGTGA
TTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCAAAATATGGTGGCCCTGACCCAACAACATATGAATACATTA
ATGCTAAAACAGATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCACATAATTATGCCAGTAGATCAACTTGTTATAGGTGTAATGCCTATAAGACTCATGAT
ATTGGTGCTTTGCCTGGTTGGAAATCTGGTGATTGGATCTGCACTAGAATAGGATGTGAAACTCACAATTACGCTAGTAGAATGGAATGCTACAAATGCAAAACTCCAAG
AAATTTTGGTGGAGCTGTTTAAAACTAAG
Protein sequenceShow/hide protein sequence
MQRHVWCRPLAFKQPSSLKNNFKEEGSKMNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHD
IGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRNFGGAV