; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G03110 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G03110
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAlba domain-containing protein
Genome locationClcChr11:3012190..3014434
RNA-Seq ExpressionClc11G03110
SyntenyClc11G03110
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599408.1 hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia]4.9e-5484.35Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEILLGKTENFDELMAAAAEER E GDADEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_004139317.1 uncharacterized protein At2g34160 [Cucumis sativus]6.9e-5685.71Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEILLGKTENFDELMAAAAEERGEIG+ADEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_008457716.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]1.1e-5687.07Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEILLGKTENFDELMAAAAEERGEIGDADEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_022946216.1 uncharacterized protein At2g34160-like [Cucurbita moschata]4.9e-5484.35Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEILLGKTENFDELMAAAAEER E GDADEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

XP_038890892.1 uncharacterized protein At2g34160-like [Benincasa hispida]2.0e-5585.33Show/hide
Query:  MEEIVEGVNSMNLSS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQK
        MEEIVEGVNSMNLSS   DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQK
Subjt:  MEEIVEGVNSMNLSS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQK

Query:  AKILNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
        AK                 IEILLGKT+NFDELMAAAAEERGEIGDADEQ
Subjt:  AKILNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

TrEMBL top hitse value%identityAlignment
A0A1S3C651 uncharacterized protein At2g34160-like5.1e-5787.07Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEILLGKTENFDELMAAAAEERGEIGDADEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A5D3BH52 DNA/RNA-binding protein Alba-like protein5.1e-5787.07Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEILLGKTENFDELMAAAAEERGEIGDADEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A6J1CNW3 uncharacterized protein At2g34160-like1.2e-5382.31Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NL  D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGL VEKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEILLGKTENFDELMAAAAEERG+ GD DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A6J1G312 uncharacterized protein At2g34160-like2.4e-5484.35Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEILLGKTENFDELMAAAAEER E GDADEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

A0A6J1KJN4 uncharacterized protein At2g34160-like6.9e-5483.67Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEI LGKTENFDELMAAAAEER E GDADEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341601.9e-4570.95Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI +GVN+MNL++DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+++VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQI
                        IEI L K+E FDELMAAA EE+    DA+ Q+
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQI

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein1.2e-4773.47Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI EGVN+MNL+ D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ
                        IEI L K+E FDELMAAA EE+ E  +A EQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQ

AT2G34160.1 Alba DNA/RNA-binding protein1.4e-4670.95Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI +GVN+MNL++DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+++VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQI
                        IEI L K+E FDELMAAA EE+    DA+ Q+
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQI

AT3G04620.1 Alba DNA/RNA-binding protein4.6e-3464.66Show/hide
Query:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWS
        +++KKNRIQVSNTKKPLFFYVNLAKRY+QQH+EVELSALGMAI TVVT++EILKNNGLA EKK+ TSTV +KD+++G+ VQKAK                
Subjt:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWS

Query:  MIEILLGKTENFDELM
         IEI+LGK++ FD L+
Subjt:  MIEILLGKTENFDELM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAATTGTAGAAGGCGTGAACTCCATGAACTTGAGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTTTTCTATGTCAA
TCTCGCTAAGAGGTACATGCAGCAGCATGATGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACAGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGG
CTGTTGAGAAGAAGATCGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATATTAAATAATGACAAGACTGGTCTCCAATGT
TTAGTTCCATGGTCTATGATTGAGATATTGCTGGGTAAAACTGAGAACTTCGACGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGAGAGATAGGTGATGCAGATGAGCA
GATTTAA
mRNA sequenceShow/hide mRNA sequence
AGAAGGGTATTATTGTACTTTTGCATACACATAAAATGAAGAAAATGCTTAACAAAAGAAGTAATAGAAAATCAGAGTTTATAATAAGTCTTCCTTCGACCTCCAATAAC
CCGAGAAGCTAGGGTTTTGAGTTGGAGTTTTTCTAGGGTTTTTGCGAGGTTGAGGAAGAGCTTCATGGAAGAAATTGTAGAAGGCGTGAACTCCATGAACTTGAGTTCCG
ATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTTTTCTATGTCAATCTCGCTAAGAGGTACATGCAGCAGCATGATGAGGTTGAACTTTCT
GCTCTGGGAATGGCAATTGCCACAGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAAGATCGCAACCTCAACTGTTGATATCAAGGATGA
CTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATATTAAATAATGACAAGACTGGTCTCCAATGTTTAGTTCCATGGTCTATGATTGAGATATTGCTGGGTAAAACTGAGA
ACTTCGACGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGAGAGATAGGTGATGCAGATGAGCAGATTTAAAAGATGGACTGCGTTTGCTGTATCTTTTTATTTTAGCTA
TAATTTTTGTTAGCAATGTCGAATTTTCCATCTATTATTTGTAGCTCTTTACGGATACGCAAGAAGTTGAGGCACTATTTCTCATTCATTGTGAGTTTGTTCATAAATTT
CATTTTAGGGATCTTCACAATTTATTTGGAGTCTTTTACCATATAGAAAACCAAATTTTGTATTGTTATTTTTTGCTACCAATCATTTGGTTTTTTTTTTCCCTTCTTTT
TTACAAATTTTATTTTTCTATATATCCCATGTCAAGAGTAGATATTGAAATGTAATAATATATTGGTATTGAAGCAA
Protein sequenceShow/hide protein sequence
MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQC
LVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQI