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Clc11G03210 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G03210
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRT_RNaseH domain-containing protein
Genome locationClcChr11:3105204..3107895
RNA-Seq ExpressionClc11G03210
SyntenyClc11G03210
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0043167 - ion binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:0140657 - ATP-dependent activity (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5932129.1 hypothetical protein HYC85_028300 [Camellia sinensis]8.8e-2153.04Show/hide
Query:  VRMEESSRNVMVGKKAV-DLVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPL-K
        VR EES R+VM+ KK   + +E   L+ +  A   ++   +  DK RVWCD CNK RHTRETCWK+HGKP NWK+SKQ E+  ++    AN  DS P  K
Subjt:  VRMEESSRNVMVGKKAV-DLVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPL-K

Query:  EQIDKILKLLKSNSS
        EQID++LKL+KSNSS
Subjt:  EQIDKILKLLKSNSS

KAF5955000.1 hypothetical protein HYC85_007856 [Camellia sinensis]5.2e-2153.04Show/hide
Query:  VRMEESSRNVMVGKKAVD-LVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPL-K
        VR EES R+VM+ K+  D  +E   L+ +  A   ++   +  DK RVWCD CNK RHTRETCWK+HGKP NWK+SKQ E+  ++    AN  DS P  K
Subjt:  VRMEESSRNVMVGKKAVD-LVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPL-K

Query:  EQIDKILKLLKSNSS
        EQID++LKL+KSNSS
Subjt:  EQIDKILKLLKSNSS

TYK15014.1 uncharacterized protein E5676_scaffold45G00480 [Cucumis melo var. makuwa]1.2e-2042.29Show/hide
Query:  MSETKVSAATVFDNRIHYNTPTVQITTIRLNGDNFLCWSQSVRM-----------------------------EESSRNVMVGKKAVD-LVESFTLVIEN
        M++TK +   V D+R   N+PTVQITTI+LNG++F  WSQSVRM                              + SR    GK   D  +  F + +  
Subjt:  MSETKVSAATVFDNRIHYNTPTVQITTIRLNGDNFLCWSQSVRM-----------------------------EESSRNVMVGKKAVD-LVESFTLVIEN

Query:  TAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPLKEQIDKI
             S+QSNKTH KSRV      K RHT ETCWKLHGK  NW++SK+ ER SHQHASNA+   S  L+E I  +
Subjt:  TAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPLKEQIDKI

TYK23156.1 uncharacterized protein E5676_scaffold142G001750 [Cucumis melo var. makuwa]7.2e-2371.08Show/hide
Query:  MNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSP-LKEQIDKILKLLKSNSS
        MN SD S+KTH K RVWCD CNK RHT ETCWKLHG P NWK+SK  ER SH H SNANI DS+  +KEQID ILKLLK+ SS
Subjt:  MNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSP-LKEQIDKILKLLKSNSS

XP_006493529.1 uncharacterized protein LOC102626863 [Citrus sinensis]1.0e-2140.1Show/hide
Query:  TVQITTIRLNGDNFLCWSQS----------------------------------------------------VRMEESSRNVMVGKK-AVDLVESFTLVI
        ++QITTI+LNG+NFL WSQS                                                    VR EES R VM+GK+  V+ +E+  L  
Subjt:  TVQITTIRLNGDNFLCWSQS----------------------------------------------------VRMEESSRNVMVGKK-AVDLVESFTLVI

Query:  ENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQ--FERTSHQHASNANIVDSSPL-KEQIDKILKLLKSNSSGLCSTELT
           A  T+  + K  +KSRVWCDHCNK RHTRETCWK+HGKP NWK S +  F RT   H +     +S P  KEQ+D +LKLLKSNS  L +   T
Subjt:  ENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQ--FERTSHQHASNANIVDSSPL-KEQIDKILKLLKSNSSGLCSTELT

TrEMBL top hitse value%identityAlignment
A0A5D3CVQ3 Uncharacterized protein5.6e-2142.29Show/hide
Query:  MSETKVSAATVFDNRIHYNTPTVQITTIRLNGDNFLCWSQSVRM-----------------------------EESSRNVMVGKKAVD-LVESFTLVIEN
        M++TK +   V D+R   N+PTVQITTI+LNG++F  WSQSVRM                              + SR    GK   D  +  F + +  
Subjt:  MSETKVSAATVFDNRIHYNTPTVQITTIRLNGDNFLCWSQSVRM-----------------------------EESSRNVMVGKKAVD-LVESFTLVIEN

Query:  TAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPLKEQIDKI
             S+QSNKTH KSRV      K RHT ETCWKLHGK  NW++SK+ ER SHQHASNA+   S  L+E I  +
Subjt:  TAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPLKEQIDKI

A0A5D3DHP9 Uncharacterized protein3.5e-2371.08Show/hide
Query:  MNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSP-LKEQIDKILKLLKSNSS
        MN SD S+KTH K RVWCD CNK RHT ETCWKLHG P NWK+SK  ER SH H SNANI DS+  +KEQID ILKLLK+ SS
Subjt:  MNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSP-LKEQIDKILKLLKSNSS

A0A7J7FV14 Helicase ATP-binding domain-containing protein4.3e-2153.04Show/hide
Query:  VRMEESSRNVMVGKKAV-DLVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPL-K
        VR EES R+VM+ KK   + +E   L+ +  A   ++   +  DK RVWCD CNK RHTRETCWK+HGKP NWK+SKQ E+  ++    AN  DS P  K
Subjt:  VRMEESSRNVMVGKKAV-DLVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPL-K

Query:  EQIDKILKLLKSNSS
        EQID++LKL+KSNSS
Subjt:  EQIDKILKLLKSNSS

A0A7J7GIG1 Phosphoenolpyruvate carboxylase3.6e-2049.59Show/hide
Query:  NTPTVQITTIRLNGDNFLCWSQSVRM---EESSRNVMVGKKAVDLVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKN
        N+ +VQITTIRLNGDNFL WSQSVRM    +     + G K    V      ++  A   ++   +  DK RVWCD CNK RHTRETCWK+HGKP NWK+
Subjt:  NTPTVQITTIRLNGDNFLCWSQSVRM---EESSRNVMVGKKAVDLVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKN

Query:  SKQFERTSHQHASNANIVDSSPL
        SKQ E+  ++    AN  DS  L
Subjt:  SKQFERTSHQHASNANIVDSSPL

A0A7J7HQ55 Uncharacterized protein2.5e-2153.04Show/hide
Query:  VRMEESSRNVMVGKKAVD-LVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPL-K
        VR EES R+VM+ K+  D  +E   L+ +  A   ++   +  DK RVWCD CNK RHTRETCWK+HGKP NWK+SKQ E+  ++    AN  DS P  K
Subjt:  VRMEESSRNVMVGKKAVD-LVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKPTNWKNSKQFERTSHQHASNANIVDSSPL-K

Query:  EQIDKILKLLKSNSS
        EQID++LKL+KSNSS
Subjt:  EQIDKILKLLKSNSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGAGACTAAGGTATCAGCTGCCACAGTTTTCGACAATCGGATCCATTACAACACTCCCACTGTCCAAATCACCACCATTCGACTTAACGGGGATAACTTTCTTTG
TTGGTCCCAGAGTGTTCGGATGGAGGAAAGCAGCAGGAATGTTATGGTTGGAAAGAAGGCAGTTGATTTAGTTGAAAGTTTCACATTAGTGATTGAAAATACTGCAATGA
ACACTTCTGATCAATCCAACAAAACTCATGACAAGTCTCGTGTCTGGTGTGATCACTGCAACAAACTCCGTCATACGAGAGAAACTTGTTGGAAACTACATGGCAAACCT
ACAAATTGGAAAAACTCTAAGCAATTTGAGAGAACTTCCCATCAGCATGCCTCCAATGCAAATATTGTTGATTCTAGTCCACTCAAAGAGCAAATTGATAAAATCCTGAA
ACTGCTAAAATCCAATTCATCAGGGTTGTGTTCAACCGAGCTGACAGAGGAAAATGGAGCCTTGCGTTCTAGAGTTAGAACGCTGCGTCCAAGAAGCTCGGGAAGAGGAA
ATAGAGGAAAGGAAGAGGATTTATTCTTTGGCAAGTACAGGGACCCCAATGCTCAGGGACTCGTAGAAGGCATTGTGGGCAGCCCGGATTATAAAGGTACCCAATGCTCA
GGGACTCATAGAAGGCATATGGGTAGCATAACAGTTCCCGTTGCTGATCGAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGAGACTAAGGTATCAGCTGCCACAGTTTTCGACAATCGGATCCATTACAACACTCCCACTGTCCAAATCACCACCATTCGACTTAACGGGGATAACTTTCTTTG
TTGGTCCCAGAGTGTTCGGATGGAGGAAAGCAGCAGGAATGTTATGGTTGGAAAGAAGGCAGTTGATTTAGTTGAAAGTTTCACATTAGTGATTGAAAATACTGCAATGA
ACACTTCTGATCAATCCAACAAAACTCATGACAAGTCTCGTGTCTGGTGTGATCACTGCAACAAACTCCGTCATACGAGAGAAACTTGTTGGAAACTACATGGCAAACCT
ACAAATTGGAAAAACTCTAAGCAATTTGAGAGAACTTCCCATCAGCATGCCTCCAATGCAAATATTGTTGATTCTAGTCCACTCAAAGAGCAAATTGATAAAATCCTGAA
ACTGCTAAAATCCAATTCATCAGGGTTGTGTTCAACCGAGCTGACAGAGGAAAATGGAGCCTTGCGTTCTAGAGTTAGAACGCTGCGTCCAAGAAGCTCGGGAAGAGGAA
ATAGAGGAAAGGAAGAGGATTTATTCTTTGGCAAGTACAGGGACCCCAATGCTCAGGGACTCGTAGAAGGCATTGTGGGCAGCCCGGATTATAAAGGTACCCAATGCTCA
GGGACTCATAGAAGGCATATGGGTAGCATAACAGTTCCCGTTGCTGATCGAAGTTGA
Protein sequenceShow/hide protein sequence
MSETKVSAATVFDNRIHYNTPTVQITTIRLNGDNFLCWSQSVRMEESSRNVMVGKKAVDLVESFTLVIENTAMNTSDQSNKTHDKSRVWCDHCNKLRHTRETCWKLHGKP
TNWKNSKQFERTSHQHASNANIVDSSPLKEQIDKILKLLKSNSSGLCSTELTEENGALRSRVRTLRPRSSGRGNRGKEEDLFFGKYRDPNAQGLVEGIVGSPDYKGTQCS
GTHRRHMGSITVPVADRS