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Clc11G03960 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G03960
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionauxin-responsive protein SAUR24-like
Genome locationClcChr11:3765980..3768610
RNA-Seq ExpressionClc11G03960
SyntenyClc11G03960
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457635.1 PREDICTED: auxin-responsive protein SAUR21-like [Cucumis melo]3.0e-4289.47Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+R LSLVPHAKQ+LKMQSGFTK QLDVPKGHVAVYVG IQ  RFVVPISYLNHPSFQQLLSYAEEEFGFHHP+GGLTIPCKED F+DLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

XP_022944365.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]7.9e-4391.58Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+RFLSLVPHAKQILKMQSGFTK QLDVPKGHVAVYVG IQ  RFVVPISYLNHPSFQQLLS+AEE+FGFHHP+GGLTIPCKEDAFIDLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

XP_022944366.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]1.8e-4290.53Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+RFLSLVPHAKQILKMQSGFTK QLDVPKGHVAVYVG IQ  RF+VPISYLNHPSFQQLLS+AEE+FGFHHP+GGLTIPCKEDAFIDLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

XP_023512611.1 auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]1.8e-4290.53Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+RFLSLVPHAKQILKMQSGFTK QLDVPKGHVAVYVG IQ  RFVVPISYLNHPSFQQLL++AEE+FGFHHP+GGLTIPCKEDAFIDLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

XP_038901159.1 auxin-responsive protein SAUR24-like [Benincasa hispida]6.0e-4391.58Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+RFLSLVPHAKQILKMQSGFTK QLDVPKGHVAVYVG IQM RFVVPISYLNHPSFQ+LL +AEEEFGFHHP+GGLTIPCKEDAFIDLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

TrEMBL top hitse value%identityAlignment
A0A1S3C5X3 auxin-responsive protein SAUR21-like1.4e-4289.47Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+R LSLVPHAKQ+LKMQSGFTK QLDVPKGHVAVYVG IQ  RFVVPISYLNHPSFQQLLSYAEEEFGFHHP+GGLTIPCKED F+DLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

A0A5D3BKE3 Auxin-responsive protein SAUR21-like1.4e-4289.47Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+R LSLVPHAKQ+LKMQSGFTK QLDVPKGHVAVYVG IQ  RFVVPISYLNHPSFQQLLSYAEEEFGFHHP+GGLTIPCKED F+DLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

A0A6J1FU83 auxin-responsive protein SAUR24-like8.5e-4390.53Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+RFLSLVPHAKQILKMQSGFTK QLDVPKGHVAVYVG IQ  RF+VPISYLNHPSFQQLLS+AEE+FGFHHP+GGLTIPCKEDAFIDLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

A0A6J1FVI4 auxin-responsive protein SAUR24-like3.8e-4391.58Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+RFLSLVPHAKQILKMQSGFTK QLDVPKGHVAVYVG IQ  RFVVPISYLNHPSFQQLLS+AEE+FGFHHP+GGLTIPCKEDAFIDLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

A0A6J1JHE3 auxin-responsive protein SAUR24-like3.8e-4391.58Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        MG+RFLSLVPHAKQILKMQSGFTK QLDVPKGHVAVYVG IQ  RFVVPISYLNHPSFQQLLS+AEE+FGFHHP+GGLTIPCKEDAFIDLTSRLQ
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

SwissProt top hitse value%identityAlignment
P33079 Auxin-induced protein 10A52.3e-2165.71Show/hide
Query:  KQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRL
        K++DVPKG+ AVYVG  +M RF +P+SYLN PSFQ+LLS AEEEFG+ HP GGLTIPCKE+ F+++T+ L
Subjt:  KQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRL

P33083 Auxin-induced protein 6B3.0e-2166.67Show/hide
Query:  TKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRL
        + K +DV KG++AVYVG  +M RFV+P+SYLN PSFQ LLS AEEEFG+HHP GGLTIPC ED F  +TS L
Subjt:  TKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRL

Q9FJF7 Auxin-responsive protein SAUR223.9e-2162.03Show/hide
Query:  KMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        K+ S  T      PKG +AVYVG  Q  R++VP+SYLN PSFQ LLS +E+EFGF HP GGLTIPC ED FI++TSRLQ
Subjt:  KMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

Q9FJG0 Auxin-responsive protein SAUR202.3e-2163.29Show/hide
Query:  KMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        K+ S  T      PKG +AVYVG  Q  R++VPISYLN PSFQ LLS +EEEFGF HP GGLTIPC ED FI++TSR Q
Subjt:  KMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

Q9FK62 Auxin-responsive protein SAUR246.1e-2261.9Show/hide
Query:  AKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        AK+IL   +G        PKG +AVYVG  Q  R++VP+SYLN PSFQ LLS +EEEFGF HP GGLTIPC ED FI++TSRLQ
Subjt:  AKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family3.0e-2456.84Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGR-IQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRL
        M +R   ++  +KQ+LK  S  +   + +PKGH+AVYVG  +Q  RFVVP++YL+HP FQ+LL  AEEEFGF HP GGLTIPC E  FIDL SRL
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGR-IQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRL

AT4G34800.1 SAUR-like auxin-responsive protein family1.6e-2263.04Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMT--RFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDL
        M +R LS V ++KQ  K QS        VPKGHVAVYVG    +  RFVVPISYLNHPSFQ LLS AEEEFGF+HP GGLTIPC+E+ F+ L
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMT--RFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDL

AT4G34810.1 SAUR-like auxin-responsive protein family3.0e-2455.24Show/hide
Query:  MGVRFLSLVPHAKQILKMQSGFTKKQLD------VPKGHVAVYVG---RIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDL-
        MG+   ++    KQILK+ S   + +        VPKGHVAVYVG    ++  RFVVPIS+LNHPSF++ LS AEEEFGF+HP GGLTIPC+E+ F+DL 
Subjt:  MGVRFLSLVPHAKQILKMQSGFTKKQLD------VPKGHVAVYVG---RIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDL-

Query:  TSRLQ
         SRLQ
Subjt:  TSRLQ

AT4G38840.1 SAUR-like auxin-responsive protein family1.2e-2557.73Show/hide
Query:  MGVRFLSLVPHAKQILK----MQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSR
        M +R   ++  +KQIL+    + S  +   LDVPKG++AVYVG   M RFVVP+SYL+ PSFQ LL  AEEEFGF HP GGLTIPC E+ FIDL SR
Subjt:  MGVRFLSLVPHAKQILK----MQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSR

AT5G18080.1 SAUR-like auxin-responsive protein family4.3e-2361.9Show/hide
Query:  AKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ
        AK+IL   +G        PKG +AVYVG  Q  R++VP+SYLN PSFQ LLS +EEEFGF HP GGLTIPC ED FI++TSRLQ
Subjt:  AKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGTTCGGTTTCTATCTTTGGTTCCTCATGCCAAGCAAATTCTGAAGATGCAGTCAGGTTTCACCAAAAAACAGTTGGATGTTCCGAAAGGCCATGTGGCAGTTTA
TGTCGGAAGGATCCAAATGACACGGTTCGTGGTTCCAATATCTTACTTAAACCATCCGTCGTTCCAGCAACTGCTCAGCTACGCAGAGGAAGAGTTTGGCTTCCATCATC
CTAAAGGGGGCCTAACAATTCCTTGCAAAGAAGATGCCTTCATTGATCTCACTTCTAGATTGCAAAATTTTGTAGAATGGATTGCCCTTCTTGCCTGTAAATCAGTCGCA
TTGTCACATCACAGTTTCAGAGAAATCCAAAGGAAGTGGTTGTTAGTTCCGATATCGTACTTGAACCATCCTACATTCATGGATTTGCTTAAGAGAGCTGAGGAAGAGTT
CGGATACAATCATCCAATGAAGATGCTTTCATGGATCTCACTGCAAGGCTACATAGTTCTTGAAAGATTTTGTACAAATAGACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGTTCGGTTTCTATCTTTGGTTCCTCATGCCAAGCAAATTCTGAAGATGCAGTCAGGTTTCACCAAAAAACAGTTGGATGTTCCGAAAGGCCATGTGGCAGTTTA
TGTCGGAAGGATCCAAATGACACGGTTCGTGGTTCCAATATCTTACTTAAACCATCCGTCGTTCCAGCAACTGCTCAGCTACGCAGAGGAAGAGTTTGGCTTCCATCATC
CTAAAGGGGGCCTAACAATTCCTTGCAAAGAAGATGCCTTCATTGATCTCACTTCTAGATTGCAAAATTTTGTAGAATGGATTGCCCTTCTTGCCTGTAAATCAGTCGCA
TTGTCACATCACAGTTTCAGAGAAATCCAAAGGAAGTGGTTGTTAGTTCCGATATCGTACTTGAACCATCCTACATTCATGGATTTGCTTAAGAGAGCTGAGGAAGAGTT
CGGATACAATCATCCAATGAAGATGCTTTCATGGATCTCACTGCAAGGCTACATAGTTCTTGAAAGATTTTGTACAAATAGACTTTGA
Protein sequenceShow/hide protein sequence
MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAVYVGRIQMTRFVVPISYLNHPSFQQLLSYAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQNFVEWIALLACKSVA
LSHHSFREIQRKWLLVPISYLNHPTFMDLLKRAEEEFGYNHPMKMLSWISLQGYIVLERFCTNRL