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Clc11G04170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G04170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionATP synthase subunit alpha
Genome locationClcChr11:3942121..3947049
RNA-Seq ExpressionClc11G04170
SyntenyClc11G04170
Gene Ontology termsGO:0015986 - ATP synthesis coupled proton transport (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domainsIPR004100 - ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain
IPR023366 - ATP synthase subunit alpha, N-terminal domain-like superfamily
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR036121 - ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHX81372.1 ATP synthase F1 subunit 1 [Chrysobalanus icaco]6.5e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY LKEIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

AHX81374.1 ATP synthase F1 subunit 1 [Couepia guianensis]6.5e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY LKEIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

TXG75638.1 hypothetical protein E1A91_1Z030300v1, partial [Gossypium mustelinum]3.8e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY L EIQ R++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

YP_009565392.1 ATPase subunit 1 [Morus notabilis]6.5e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY LKEIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

YP_009913606.1 ATPase subunit 1 [Luffa acutangula]6.5e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY LKEIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

TrEMBL top hitse value%identityAlignment
A0A023T0Y9 ATP synthase subunit alpha3.1e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY LKEIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

A0A5B7BC00 ATP synthase subunit alpha1.4e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY L EIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERRHVEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

A0A5C7J2V6 ATP synthase subunit alpha (Fragment)1.8e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY L EIQ R++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

A0A7D5Y002 ATP synthase subunit alpha3.1e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY LKEIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

A1XIU3 ATP synthase subunit alpha (Fragment)3.1e-4889.17Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY LKEIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

SwissProt top hitse value%identityAlignment
P05493 ATP synthase subunit alpha, mitochondrial4.2e-5088.33Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY L EIQ  +LVEFASGVKGIALNLENENVGIVVFGSDT+IKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

P18260 ATP synthase subunit alpha, mitochondrial3.2e-5088.33Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY L EIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

P24459 ATP synthase subunit alpha, mitochondrial3.2e-5088.33Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY L EIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

Q01915 ATP synthase subunit alpha, mitochondrial3.2e-5088.33Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY L EIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

Q06735 ATP synthase subunit alpha, mitochondrial3.2e-5088.33Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIARVY L EIQ  ++VEFASGVKGIALNLENENVGIVVFGSDTAIKE DLVKRTGSIVDVPA KAMLGRVVDALGVPIDGRGALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        ERR VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE

Arabidopsis top hitse value%identityAlignment
AT2G07698.1 ATPase, F1 complex, alpha subunit protein9.0e-4868.87Show/hide
Query:  NQRTKDEKLGPQITKTLR---RNQRCNMRGGVDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGS
        N+   +E+   ++T       RN   N +  VDEI RVVSV DGIA+VY L EIQ  ++V FA+GVKG+ALNLENENVGIVVFG DTAIKE DLVKRTGS
Subjt:  NQRTKDEKLGPQITKTLR---RNQRCNMRGGVDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGS

Query:  IVDVPAEKAMLGRVVDALGVPIDGRGALSDHERRHVEVKASGIVECKSVHE
        IVDVPA KAMLGRVVDA+GVPIDG+GALSDHE+R VEVKA GI+E KSVHE
Subjt:  IVDVPAEKAMLGRVVDALGVPIDGRGALSDHERRHVEVKASGIVECKSVHE

ATCG00120.1 ATP synthase subunit alpha6.3e-2544.93Show/hide
Query:  QITKTLR-RNQRCNMRGGVDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGR
        +I+  +R R ++ N    +     V+ V DGIAR+Y L E+   +LVEF  G  GIALNLE+ NVG+V+ G    I+E   VK TG I  +P  +A LGR
Subjt:  QITKTLR-RNQRCNMRGGVDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGR

Query:  VVDALGVPIDGRGALSDHERRHVEVKASGIVECKSVHE
        V++AL  PIDGRG +S  E R +E  A GI+  +SV+E
Subjt:  VVDALGVPIDGRGALSDHERRHVEVKASGIVECKSVHE

ATMG01190.1 ATP synthase subunit 11.5e-4781.67Show/hide
Query:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH
        VDEI RVVSV DGIA+VY L EIQ  ++V FA+GVKG+ALNLENENVGIVVFG DTAIKE DLVKRTGSIVDVPA KAMLGRVVDA+GVPIDG+GALSDH
Subjt:  VDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDH

Query:  ERRHVEVKASGIVECKSVHE
        E+R VEVKA GI+E KSVHE
Subjt:  ERRHVEVKASGIVECKSVHE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGAGACAAGGGTAATGGATTGGATGGGGAGTGTGGAACTGGACAGAGTGACAGTTCGTTGTGGCTGACCAATGACGTGGCAGCAGAGGAGTGGTCTGTGAGGAT
CCAATGTAATCTCCATTTTTACATCACAGTGATCAAGTGGATTCCGATCTTTTTGTTGAGAAGTGGGTCCCACTCCATTGTGGCCGAGATTCCCTCGAAGATTCTCCAAA
TTTTTCTTCCACCAGCCGTCTCTTGTTTGTTGAACCAAAGGACGAAGGACGAAAAGCTTGGTCCTCAAATTACAAAAACATTGAGAAGGAACCAGAGGTGTAACATGAGA
GGAGGAGTGGATGAGATCAGTCGAGTGGTCTCAGTTAGAGATGGGATTGCGCGTGTTTACAGATTGAAGGAGATTCAAGTTAGGAAATTGGTGGAATTTGCCAGTGGCGT
AAAAGGAATAGCCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATACCGCTATTAAAGAAAGAGATCTTGTCAAGCGCACTGGATCGATTGTGG
ATGTTCCTGCGGAAAAGGCTATGCTCGGGCGTGTGGTCGATGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACATGTCGAAGTGAAA
GCCTCTGGAATTGTTGAATGTAAATCAGTGCACGAGCGCCAATGCAAACAGGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGAGACAAGGGTAATGGATTGGATGGGGAGTGTGGAACTGGACAGAGTGACAGTTCGTTGTGGCTGACCAATGACGTGGCAGCAGAGGAGTGGTCTGTGAGGAT
CCAATGTAATCTCCATTTTTACATCACAGTGATCAAGTGGATTCCGATCTTTTTGTTGAGAAGTGGGTCCCACTCCATTGTGGCCGAGATTCCCTCGAAGATTCTCCAAA
TTTTTCTTCCACCAGCCGTCTCTTGTTTGTTGAACCAAAGGACGAAGGACGAAAAGCTTGGTCCTCAAATTACAAAAACATTGAGAAGGAACCAGAGGTGTAACATGAGA
GGAGGAGTGGATGAGATCAGTCGAGTGGTCTCAGTTAGAGATGGGATTGCGCGTGTTTACAGATTGAAGGAGATTCAAGTTAGGAAATTGGTGGAATTTGCCAGTGGCGT
AAAAGGAATAGCCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATACCGCTATTAAAGAAAGAGATCTTGTCAAGCGCACTGGATCGATTGTGG
ATGTTCCTGCGGAAAAGGCTATGCTCGGGCGTGTGGTCGATGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACATGTCGAAGTGAAA
GCCTCTGGAATTGTTGAATGTAAATCAGTGCACGAGCGCCAATGCAAACAGGGTTAA
Protein sequenceShow/hide protein sequence
MLGDKGNGLDGECGTGQSDSSLWLTNDVAAEEWSVRIQCNLHFYITVIKWIPIFLLRSGSHSIVAEIPSKILQIFLPPAVSCLLNQRTKDEKLGPQITKTLRRNQRCNMR
GGVDEISRVVSVRDGIARVYRLKEIQVRKLVEFASGVKGIALNLENENVGIVVFGSDTAIKERDLVKRTGSIVDVPAEKAMLGRVVDALGVPIDGRGALSDHERRHVEVK
ASGIVECKSVHERQCKQG