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Clc11G04480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G04480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein CASPARIAN STRIP INTEGRITY FACTOR 1-like
Genome locationClcChr11:4265025..4268221
RNA-Seq ExpressionClc11G04480
SyntenyClc11G04480
Gene Ontology termsGO:0010039 - response to iron ion (biological process)
GO:0010447 - response to acidic pH (biological process)
GO:0055072 - iron ion homeostasis (biological process)
GO:2000067 - regulation of root morphogenesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0048226 - Casparian strip (cellular component)
InterPro domainsIPR038974 - Protein Casparian strip integrity factor 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460971.1 PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo]4.9e-3389.01Show/hide
Query:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTR-DETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MFL +KLSFIFILLLSTSFLS+ICIAGRPSKLVPEVVANGGV H D KRKTR DE ED IHERLLRVNTKDYGRYDPAPA VKPPFKLIPN
Subjt:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTR-DETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

XP_011649242.1 protein CASPARIAN STRIP INTEGRITY FACTOR 2 [Cucumis sativus]3.2e-3286.67Show/hide
Query:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MFL +KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVA GGV H D KRKTR E E+ IHERLLRVNTKDYGRYDP+PA VKPPFKLIPN
Subjt:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

XP_022146128.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1 [Momordica charantia]6.4e-2573.03Show/hide
Query:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MFL +K SF+F LL+STS LST   AGRPSKLVP+  A GGV H D +RK   E EDIHERLLR NTKDYGRYDPAPA VKPPFKLIPN
Subjt:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

XP_022986650.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Cucurbita maxima]7.6e-2675.56Show/hide
Query:  MFLNFKLSFI-FILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MF  +KL F+ F LLLSTSF STICIAGRPSKLV EVV   GV H   KR TRDE ED+HERLLRVNTKDYGRYDP+P+ VKPPFKLIPN
Subjt:  MFLNFKLSFI-FILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

XP_038902215.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Benincasa hispida]1.8e-3591.01Show/hide
Query:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MFL +KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGV H D KRKTR E EDIHERLLRVNTKDYGRYDPAPA VKPPFKLIPN
Subjt:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

TrEMBL top hitse value%identityAlignment
A0A0A0LJ22 Uncharacterized protein1.5e-3286.67Show/hide
Query:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MFL +KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVA GGV H D KRKTR E E+ IHERLLRVNTKDYGRYDP+PA VKPPFKLIPN
Subjt:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

A0A1S3CEV9 uncharacterized protein LOC1034996982.4e-3389.01Show/hide
Query:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTR-DETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MFL +KLSFIFILLLSTSFLS+ICIAGRPSKLVPEVVANGGV H D KRKTR DE ED IHERLLRVNTKDYGRYDPAPA VKPPFKLIPN
Subjt:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTR-DETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

A0A5A7TUS0 Uncharacterized protein2.4e-3389.01Show/hide
Query:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTR-DETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MFL +KLSFIFILLLSTSFLS+ICIAGRPSKLVPEVVANGGV H D KRKTR DE ED IHERLLRVNTKDYGRYDPAPA VKPPFKLIPN
Subjt:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTR-DETED-IHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

A0A6J1CXR3 protein CASPARIAN STRIP INTEGRITY FACTOR 13.1e-2573.03Show/hide
Query:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MFL +K SF+F LL+STS LST   AGRPSKLVP+  A GGV H D +RK   E EDIHERLLR NTKDYGRYDPAPA VKPPFKLIPN
Subjt:  MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

A0A6J1JEM0 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like3.7e-2675.56Show/hide
Query:  MFLNFKLSFI-FILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        MF  +KL F+ F LLLSTSF STICIAGRPSKLV EVV   GV H   KR TRDE ED+HERLLRVNTKDYGRYDP+P+ VKPPFKLIPN
Subjt:  MFLNFKLSFI-FILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

SwissProt top hitse value%identityAlignment
O65684 Protein CASPARIAN STRIP INTEGRITY FACTOR 21.1e-0845.24Show/hide
Query:  KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        KL FI  LL+S S  + +C AGR S L    + +   +H +V  +   E    HER+LR+N++DYG   P P LV+PPFKLIPN
Subjt:  KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

Q84MD2 Protein CASPARIAN STRIP INTEGRITY FACTOR 13.0e-0945.24Show/hide
Query:  KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        KL FIF +++S S LS +  AGRPS  V         + ++++ +  + +   HERLLR+NTKDYG   P+P L +PPFKLIPN
Subjt:  KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

Arabidopsis top hitse value%identityAlignment
AT2G16385.1 unknown protein2.1e-1045.24Show/hide
Query:  KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        KL FIF +++S S LS +  AGRPS  V         + ++++ +  + +   HERLLR+NTKDYG   P+P L +PPFKLIPN
Subjt:  KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN

AT4G34600.1 unknown protein8.1e-1045.24Show/hide
Query:  KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN
        KL FI  LL+S S  + +C AGR S L    + +   +H +V  +   E    HER+LR+N++DYG   P P LV+PPFKLIPN
Subjt:  KLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTCAACTTCAAGCTTAGCTTCATCTTCATCCTTCTCCTCTCAACTTCATTTTTATCCACCATTTGCATCGCGGGTCGACCTTCTAAGTTGGTTCCTGAGGTTGT
TGCTAATGGTGGAGTTGAGCATGTGGATGTAAAGAGGAAGACAAGAGATGAAACGGAGGACATCCATGAAAGGCTTTTAAGGGTAAATACCAAAGACTATGGAAGATATG
ATCCAGCTCCAGCCTTAGTGAAGCCTCCTTTCAAGCTTATTCCCAACTGA
mRNA sequenceShow/hide mRNA sequence
GCTTGGTTTAGACTTAGTGCCCCAACAAAAGAAAAGTGGTTTCTTTCTCCCTTTTCCATTTGAATTTTAAACTCAAAAGCATTAAAGCAATTGATCAAAAATAATTCTTT
ATAATTAACAACCAACTTTTAGCTTATCTATAAGACCCCATCACTTTGTCCAATTCAATGTCCCTTAAATCATACATAAGGAAGCATCATTTGGGTCTATGCTCTTGGGA
AAGATAAGAGAAAGAAGAAGGAAAAAAAAAAAGACCAAATTTGAAAAACCACACAAAAGTCATCATCATCATTAAGGTTGTTCCTATCATATTTGGAAGTCATGTTTCTC
AACTTCAAGCTTAGCTTCATCTTCATCCTTCTCCTCTCAACTTCATTTTTATCCACCATTTGCATCGCGGGTCGACCTTCTAAGTTGGTTCCTGAGGTTGTTGCTAATGG
TGGAGTTGAGCATGTGGATGTAAAGAGGAAGACAAGAGATGAAACGGAGGACATCCATGAAAGGCTTTTAAGGGTAAATACCAAAGACTATGGAAGATATGATCCAGCTC
CAGCCTTAGTGAAGCCTCCTTTCAAGCTTATTCCCAACTGATAAATTAAAAAAAATGGACTCTTTTACTAGTACCTTATAAATATAAATAATTCAAATCAAATATCATGT
GTTTCATAGTATAAGTATAATATATATGTATTATCTTATATATACTATATAGTGTATAATATGGTCACAGCAGACTTTATAATGTTTTGCTTGAGTTATTAGTACTATAT
ATATATATATTGTGTATTTTGGAATATAGGTTGTTGTTCTATGATTATAATCTATTTCTAATACTACTTTGCTCTTAATATT
Protein sequenceShow/hide protein sequence
MFLNFKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVANGGVEHVDVKRKTRDETEDIHERLLRVNTKDYGRYDPAPALVKPPFKLIPN