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Clc11G04780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G04780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription factor RADIALIS-like
Genome locationClcChr11:4562196..4564370
RNA-Seq ExpressionClc11G04780
SyntenyClc11G04780
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148844.1 transcription factor RADIALIS [Cucumis sativus]1.7e-4085.15Show/hide
Query:  ISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYT-SASAPETSNGNINDQEQRMRNLKL
        ++S S  S+SWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD LVEDVKHIESGRVPFPKYT S+S+P TSN NI DQEQRMRN+KL
Subjt:  ISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYT-SASAPETSNGNINDQEQRMRNLKL

Query:  H
        H
Subjt:  H

XP_008460938.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]4.0e-4287.16Show/hide
Query:  SSISSSSHDSA--SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYT----SASAPET-SNGNINDQE
        +SISSSSHDSA  SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD LVEDVKHIESGRVPFPKYT    S+SAP T SN NI DQE
Subjt:  SSISSSSHDSA--SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYT----SASAPET-SNGNINDQE

Query:  QRMRNLKLH
        QRMRN+KLH
Subjt:  QRMRNLKLH

XP_023513343.1 protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]1.9e-3986.73Show/hide
Query:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTS-ASAPETSNGNINDQEQRMRNLKL
        SSSH S+SWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVKHIESG VPFP Y+S ASA ETSN N++DQEQRMRNLKL
Subjt:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTS-ASAPETSNGNINDQEQRMRNLKL

XP_023515007.1 transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]5.4e-3985.71Show/hide
Query:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKLH
        SSSHDS SW+PNQNKAFERALAVFDKDTPDRWLNVA AV G KT DEVKRHF+LLVEDVKHIESG VPFP YTS+SAP TS+ NINDQEQRMRN+KLH
Subjt:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKLH

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]1.2e-4391.92Show/hide
Query:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETS-NGNINDQEQRMRNLKLH
        SSSHDS SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKT DEVKRHFDLLVEDVKHIESGRVPFP YTS S P TS NGN+NDQEQRMRNLKLH
Subjt:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETS-NGNINDQEQRMRNLKLH

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1428.1e-4185.15Show/hide
Query:  ISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYT-SASAPETSNGNINDQEQRMRNLKL
        ++S S  S+SWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD LVEDVKHIESGRVPFPKYT S+S+P TSN NI DQEQRMRN+KL
Subjt:  ISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYT-SASAPETSNGNINDQEQRMRNLKL

Query:  H
        H
Subjt:  H

A0A1S3CDK8 protein RADIALIS-like 21.9e-4287.16Show/hide
Query:  SSISSSSHDSA--SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYT----SASAPET-SNGNINDQE
        +SISSSSHDSA  SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD LVEDVKHIESGRVPFPKYT    S+SAP T SN NI DQE
Subjt:  SSISSSSHDSA--SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYT----SASAPET-SNGNINDQE

Query:  QRMRNLKLH
        QRMRN+KLH
Subjt:  QRMRNLKLH

A0A6J1CYR5 protein RADIALIS-like 24.6e-3681.63Show/hide
Query:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKLH
        SS   S SWTPNQNKAFERALAVFDKDTPDRW NVANAV GGKT DEVKRHFDLLVEDVKHIESGR+PFP YT A+   +SNGN+ND+E+RMRNLKLH
Subjt:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKLH

A0A6J1FXX9 protein RADIALIS-like 21.3e-3885.71Show/hide
Query:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTS-ASAPETSNGNINDQEQRMRNLKL
        +SSH S+SWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVKHIESG VPFP Y+S ASA  TSN NINDQEQRMR+LKL
Subjt:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTS-ASAPETSNGNINDQEQRMRNLKL

A0A6J1JBS7 protein RADIALIS-like 21.3e-3885.71Show/hide
Query:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTS-ASAPETSNGNINDQEQRMRNLKL
        SSSH S+SWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVKHIE G VPFP Y+S ASA  TSN NINDQEQRMRNLKL
Subjt:  SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTS-ASAPETSNGNINDQEQRMRNLKL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 19.3e-2657.69Show/hide
Query:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMR
        MASSS+SS S  S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++LLV+D+  IE+G VPFP Y ++     +NG ++ +E+RMR
Subjt:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMR

Query:  NLKL
        N++L
Subjt:  NLKL

Q1A173 Protein RADIALIS-like 65.6e-2360Show/hide
Query:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-M
        MAS+S SS S     WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D+LVED+ +IE+GRVP P Y +    E+++ +IND + R M
Subjt:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-M

Query:  RNLKL
        +NLK+
Subjt:  RNLKL

Q58FS3 Transcription factor RADIALIS4.6e-2555.56Show/hide
Query:  ISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKL
        ++S+      W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H+++LVED+K+IESG+VPFP Y       T+ GN+   E+R RNLK+
Subjt:  ISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKL

Q8GW75 Protein RADIALIS-like 59.6e-2358.1Show/hide
Query:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-M
        MASSS+SSSS    SWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D+LVED+ +IE   VP PKY +      S G I+D + R M
Subjt:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-M

Query:  RNLKL
        +N+++
Subjt:  RNLKL

Q9SIJ5 Protein RADIALIS-like 28.4e-2759.62Show/hide
Query:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMR
        MAS S+  SS+ S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +DLLV D++ IE+G VPFP Y + +   ++ G + D+E+RMR
Subjt:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMR

Query:  NLKL
        ++KL
Subjt:  NLKL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.8e-2458.1Show/hide
Query:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-M
        MASSS+SSSS    SWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D+LVED+ +IE   VP PKY +      S G I+D + R M
Subjt:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-M

Query:  RNLKL
        +N+++
Subjt:  RNLKL

AT1G75250.1 RAD-like 69.9e-2360.2Show/hide
Query:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR
        MAS+S SS S     WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D+LVED+ +IE+GRVP P Y +    E+++ +IND + R
Subjt:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR

AT1G75250.2 RAD-like 64.0e-2460Show/hide
Query:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-M
        MAS+S SS S     WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D+LVED+ +IE+GRVP P Y +    E+++ +IND + R M
Subjt:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-M

Query:  RNLKL
        +NLK+
Subjt:  RNLKL

AT2G21650.1 Homeodomain-like superfamily protein6.0e-2859.62Show/hide
Query:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMR
        MAS S+  SS+ S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +DLLV D++ IE+G VPFP Y + +   ++ G + D+E+RMR
Subjt:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMR

Query:  NLKL
        ++KL
Subjt:  NLKL

AT4G39250.1 RAD-like 16.6e-2757.69Show/hide
Query:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMR
        MASSS+SS S  S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++LLV+D+  IE+G VPFP Y ++     +NG ++ +E+RMR
Subjt:  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMR

Query:  NLKL
        N++L
Subjt:  NLKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCAGTTCCATCTCCTCATCCTCTCATGACTCTGCCTCTTGGACTCCCAACCAAAACAAAGCCTTTGAAAGGGCCTTGGCTGTCTTTGACAAGGACACCCCTGA
TCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACATTTCGACCTTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGTG
TTCCTTTCCCTAAGTACACCTCCGCTTCTGCCCCCGAAACCTCCAATGGCAACATCAACGACCAAGAACAAAGGATGAGAAACCTGAAACTTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCAGTTCCATCTCCTCATCCTCTCATGACTCTGCCTCTTGGACTCCCAACCAAAACAAAGCCTTTGAAAGGGCCTTGGCTGTCTTTGACAAGGACACCCCTGA
TCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACATTTCGACCTTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGTG
TTCCTTTCCCTAAGTACACCTCCGCTTCTGCCCCCGAAACCTCCAATGGCAACATCAACGACCAAGAACAAAGGATGAGAAACCTGAAACTTCACTAA
Protein sequenceShow/hide protein sequence
MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKLH