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Clc11G04900 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G04900
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMediator of RNA polymerase II transcription subunit 32
Genome locationClcChr11:4696897..4702787
RNA-Seq ExpressionClc11G04900
SyntenyClc11G04900
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009631 - cold acclimation (biological process)
GO:0010150 - leaf senescence (biological process)
GO:0048364 - root development (biological process)
GO:0016592 - mediator complex (cellular component)
InterPro domainsIPR033244 - Mediator of RNA polymerase II transcription subunit 32


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045925.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]1.1e-6697.2Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE
        LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLE
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE

Query:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        QMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

TYK13665.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]3.3e-6696.5Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE
        LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLE
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE

Query:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        QMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

XP_004148855.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus]3.3e-6696.5Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE
        LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAVRLE
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE

Query:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        QMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

XP_008457936.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]3.3e-6696.5Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE
        LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLE
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE

Query:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        QMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

XP_038902813.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida]5.0e-6797.2Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE
        LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQA TTG+PPISAVRLE
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE

Query:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        QMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

TrEMBL top hitse value%identityAlignment
A0A0A0LIN7 Uncharacterized protein1.6e-6696.5Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE
        LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAVRLE
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE

Query:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        QMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A1S3C6T6 mediator of RNA polymerase II transcription subunit 321.6e-6696.5Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE
        LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLE
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE

Query:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        QMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A5A7TWZ7 Mediator of RNA polymerase II transcription subunit 325.4e-6797.2Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE
        LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLE
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE

Query:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        QMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A5D3CQ46 Mediator of RNA polymerase II transcription subunit 321.6e-6696.5Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE
        LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLE
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLE

Query:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        QMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  QMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A6J1JH28 mediator of RNA polymerase II transcription subunit 32-like isoform X21.0e-6595.89Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLPPISAVR
        LVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ  ATTTGLPPISA+R
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLPPISAVR

Query:  LEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ
        LEQMSKAVRWLVIELQHGSG AAASASAHSHPSAPFDARFTEDATQ
Subjt:  LEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ

SwissProt top hitse value%identityAlignment
Q84VW5 Mediator of RNA polymerase II transcription subunit 321.8e-4367.33Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPP
        +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEEFVESVKQRIGSECLVDEATG   + AG    A  TG    LPP
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPP

Query:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        ISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

Arabidopsis top hitse value%identityAlignment
AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1.3e-4467.33Show/hide
Query:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPP
        +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEEFVESVKQRIGSECLVDEATG   + AG    A  TG    LPP
Subjt:  LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPP

Query:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        ISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAG
CTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTATCTCAGTCGTCTTCCTCGATATCTC
TCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGACTA
GTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCT
TGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGG
CCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATT
GAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAG
CTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTATCTCAGTCGTCTTCCTCGATATCTC
TCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGACTA
GTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCT
TGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGG
CCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATT
GAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG
Protein sequenceShow/hide protein sequence
MDDVRLCEETEKLRDAVKAEATTILSEACENGAVLSSFTVKPKETNGNYNNIDEAPKFTKLAPHLSQSSSSISLTLSPRQATAPPPSDLRRSAAAPPSDVRPAAEVSRRL
VDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVI
ELQHGSGAAASASAHSHPSAPFDARFTEDATQ