; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G05080 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G05080
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S19
Genome locationClcChr11:4898460..4900069
RNA-Seq ExpressionClc11G05080
SyntenyClc11G05080
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.2e-7497.2Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_004141465.1 40S ribosomal protein S19-3 [Cucumis sativus]1.7e-7599.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022923365.1 40S ribosomal protein S19-3-like [Cucurbita moschata]1.4e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022938991.1 40S ribosomal protein S19-3 [Cucurbita moschata]3.2e-7497.2Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]3.2e-7497.2Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

TrEMBL top hitse value%identityAlignment
A0A0A0KSI3 Uncharacterized protein8.1e-7699.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A1S3CB93 40S ribosomal protein S19-38.1e-7699.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A5A7T7J1 40S ribosomal protein S19-3-like8.1e-7699.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1EBL3 40S ribosomal protein S19-3-like6.9e-7597.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTL0 40S ribosomal protein S19-3-like6.9e-7597.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S191.7e-6280Show/hide
Query:  ATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA
        +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYD DWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+
Subjt:  ATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA

Query:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV
        R+ILQQLQ+M I+DVDPKGGR ITS GRRDLDQVAGR+ V
Subjt:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV

Q94613 40S ribosomal protein S191.2e-4456.72Show/hide
Query:  TVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL
        +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+ DWY++RAAS+ R +Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +L
Subjt:  TVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL

Query:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        Q L+ + IV+ DP GGRR+TS GRRDLD++A +I
Subjt:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9FNP8 40S ribosomal protein S19-31.6e-6886.62Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGKIELP WTDIVKT + KELAPYD DWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

Q9LF30 40S ribosomal protein S19-28.7e-6787.05Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGKIELP WTDIVKT R KELAPYD DWYY+RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9SGA6 40S ribosomal protein S19-12.1e-6885.31Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGKIELP WTDIVKT + KELAPYD DWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein1.5e-6985.31Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGKIELP WTDIVKT + KELAPYD DWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

AT5G15520.1 Ribosomal protein S19e family protein6.2e-6887.05Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGKIELP WTDIVKT R KELAPYD DWYY+RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

AT5G61170.1 Ribosomal protein S19e family protein1.1e-6986.62Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGKIELP WTDIVKT + KELAPYD DWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGCAAAGACTGTGAAAGACGTCTCCCCTCACGAATTCGTGAAAGCCTATGCGGCTCATCTCAAGAGATCCGGGAAGATTGAACTACCTCCCTGGACTGATAT
AGTTAAAACTGCAAGATTTAAAGAATTGGCACCTTATGATGCTGATTGGTATTATCTGAGAGCTGCAAGCATGGCTAGGAAAATCTATTTGAGGGGTGGACTCGGTGTGG
GGGCTTTTAAGCGGATTTATGGCGGAAGCAAAAGGAATGGGAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGTGCTATCGCCCGTCATATTTTACAACAGTTGCAGGAA
ATGAACATCGTTGATGTTGATCCCAAGGGTGGTAGGAGAATCACTTCAAGCGGCCGACGGGATCTTGACCAAGTTGCTGGGCGGATTGTTGTTGCCCCTTGA
mRNA sequenceShow/hide mRNA sequence
CTTGATTCTAATTGTTTTTGACTCAAGAATGACAATAATCTAATTATTATTCGATAAAAGGGGGAAAAAAATGGGGAAATCCAAAAATGAAACAGGCCAAGCCCAAATGA
ACCATCAAGTAATATAAAAAGTTGCGGAAGCCCTAGCCCTAGGGTTTACTCTTTCTATTTCTCTCGATCATCTGCATTCGCTCGAGCATGGCGACGGCAAAGACTGTGAA
AGACGTCTCCCCTCACGAATTCGTGAAAGCCTATGCGGCTCATCTCAAGAGATCCGGGAAGATTGAACTACCTCCCTGGACTGATATAGTTAAAACTGCAAGATTTAAAG
AATTGGCACCTTATGATGCTGATTGGTATTATCTGAGAGCTGCAAGCATGGCTAGGAAAATCTATTTGAGGGGTGGACTCGGTGTGGGGGCTTTTAAGCGGATTTATGGC
GGAAGCAAAAGGAATGGGAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGTGCTATCGCCCGTCATATTTTACAACAGTTGCAGGAAATGAACATCGTTGATGTTGATCC
CAAGGGTGGTAGGAGAATCACTTCAAGCGGCCGACGGGATCTTGACCAAGTTGCTGGGCGGATTGTTGTTGCCCCTTGATTGATGAGAGATTTCTGTGTTTGTTGATGAG
ATTACCACCGTGAAAATTTTGGCTATTCAGAATGAAGATAAGCTTACTCATGTTTTCTGGGTTTTGGATGGTTTAAAAGTTCATTTTCATTTCCTTGGTCATAATTTATG
GGTTTTTAGGATGAAATGTTTTTTCAATATTATCAGCAGTAGCCTGGATGATGCTTAGAAACGGACCTTGTAGTAATTTTTTGACATATCATATCAATTATTAATAGAGT
TTGCTGTTTGTCTA
Protein sequenceShow/hide protein sequence
MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE
MNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP