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Clc11G05090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G05090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranscription factor UPBEAT1-like
Genome locationClcChr11:4906838..4908132
RNA-Seq ExpressionClc11G05090
SyntenyClc11G05090
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039441.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]7.1e-2166.99Show/hide
Query:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNA---QPRQTDQLFKETADYIVLLKT
        MSSKTNTLPNPLRNY RRRTKRSLT SRRR HRRH       N   R    T  C S+VS KL+ALQ+LIPPQS A   QPRQ D+LFK+TADYIV+LKT
Subjt:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNA---QPRQTDQLFKETADYIVLLKT

Query:  RVI
        +V+
Subjt:  RVI

KAG6578552.1 hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia]2.4e-1661.54Show/hide
Query:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRS----NNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLK
        MS KTNTL N     LR  TKRSL DSRRR HRRH  A+R+     NG    ++P S    DVSAKL+ALQ+LIP QS A+ RQT+QLFKETADYIVLLK
Subjt:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRS----NNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLK

Query:  TRVI
        T+V+
Subjt:  TRVI

KAG7016112.1 hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-1661.54Show/hide
Query:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRS----NNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLK
        MS KTNTL N     LR  TKRSL DSRRR HRRH  A+R+     NG    ++P S    DVSAKL+ALQ+LIP QS A+ RQT+QLFKETADYIVLLK
Subjt:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRS----NNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLK

Query:  TRVI
        T+V+
Subjt:  TRVI

KAG7986517.1 hypothetical protein I3843_03G085300 [Carya illinoinensis]3.2e-0548.39Show/hide
Query:  RNYLRRRTKRSL--TDSRRRSHRRHCPALRS--NNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSN-AQPRQTDQLFKETADYIVLLKTRVI
        + +LRR  +R +  T SRRR H R C   RS  NNG R        C S+VS KL+AL+ LIP   N A+  + DQLF+ETA+YI+LL+TRV+
Subjt:  RNYLRRRTKRSL--TDSRRRSHRRHCPALRS--NNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSN-AQPRQTDQLFKETADYIVLLKTRVI

XP_022993697.1 uncharacterized protein LOC111489609 [Cucurbita maxima]1.9e-1053.7Show/hide
Query:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGS--------DVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYI
        M+ KT TL N     LR RTKRSL DS  R+   H            +TT +SPC S        DVSAKL+ALQ+LIP QS A+ RQT+QLFKETADYI
Subjt:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGS--------DVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYI

Query:  VLLKTRVI
        VLLKT+V+
Subjt:  VLLKTRVI

TrEMBL top hitse value%identityAlignment
A0A314YX88 Uncharacterized protein2.2e-0446.6Show/hide
Query:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRS--NNGSRRDTTPTSPCGS-DVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKT
        MSS    L   L    RRRT+R  T SRRR   R C A R   NNG R+     S C S  VSAKL+ L++LI P    +  + ++LF+ETADYIVLL+T
Subjt:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRS--NNGSRRDTTPTSPCGS-DVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKT

Query:  RVI
        +V+
Subjt:  RVI

A0A5D3BNP5 Transcription factor UPBEAT1-like3.4e-2166.99Show/hide
Query:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNA---QPRQTDQLFKETADYIVLLKT
        MSSKTNTLPNPLRNY RRRTKRSLT SRRR HRRH       N   R    T  C S+VS KL+ALQ+LIPPQS A   QPRQ D+LFK+TADYIV+LKT
Subjt:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNA---QPRQTDQLFKETADYIVLLKT

Query:  RVI
        +V+
Subjt:  RVI

A0A5N6QW57 Uncharacterized protein1.3e-0450Show/hide
Query:  RNYLRRRTKRSL---TDSRRRSHRRHCPALRS-NNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVI
        R  L RRT+R L   T +RRR   R C A RS NNG R        C + VS KL+AL+ LIP   N +  + DQLFKETA+YIVLL+T+V+
Subjt:  RNYLRRRTKRSL---TDSRRRSHRRHCPALRS-NNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVI

A0A6A4M9E9 Uncharacterized protein (Fragment)2.2e-0448.75Show/hide
Query:  RTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTR
        R  R  T  R+ S RR     R+ N SR        C S VS KL+AL+ LIP  +N + R+ DQLF+ETADYIVLLKT+
Subjt:  RTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTR

A0A6J1JTK8 uncharacterized protein LOC1114896099.3e-1153.7Show/hide
Query:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGS--------DVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYI
        M+ KT TL N     LR RTKRSL DS  R+   H            +TT +SPC S        DVSAKL+ALQ+LIP QS A+ RQT+QLFKETADYI
Subjt:  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGS--------DVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYI

Query:  VLLKTRVI
        VLLKT+V+
Subjt:  VLLKTRVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTATAATTACGCTGATGTAATTAGAGAGAAATGGCAAAACGGTAATAAAGGTGAAGTAAGGGGGCAAAGAGTTAGCGTACTGTTACTTAAAGTTTCTCCG
AGTAATTGGAGACAAACAAGACAAGCAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCTTAGAAGAAGAACCAAACGATCTTTAACCGAT
TCCCGCCGTCGCTCCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAAGCCGGCGGGATACGACCCCCACATCGCCCTGTGGCTCCGACGTCTCCGCC
AAACTGGATGCCCTCCAGACCCTCATTCCGCCCCAATCCAACGCCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAA
ACCCGGGTCATTAGAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTATAATTACGCTGATGTAATTAGAGAGAAATGGCAAAACGGTAATAAAGGTGAAGTAAGGGGGCAAAGAGTTAGCGTACTGTTACTTAAAGTTTCTCCG
AGTAATTGGAGACAAACAAGACAAGCAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCTTAGAAGAAGAACCAAACGATCTTTAACCGAT
TCCCGCCGTCGCTCCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAAGCCGGCGGGATACGACCCCCACATCGCCCTGTGGCTCCGACGTCTCCGCC
AAACTGGATGCCCTCCAGACCCTCATTCCGCCCCAATCCAACGCCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAA
ACCCGGGTCATTAGAAAGTGA
Protein sequenceShow/hide protein sequence
MGYNYADVIREKWQNGNKGEVRGQRVSVLLLKVSPSNWRQTRQAMSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSA
KLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVIRK