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Clc11G05245 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G05245
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr11:5015426..5015749
RNA-Seq ExpressionClc11G05245
SyntenyClc11G05245
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039429.1 hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa]2.6e-2052.29Show/hide
Query:  MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATY-GEATAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRC
        MGGR SF G+ +V + +   TIL SS+ CRGSVL KANATY G +T E++IY DITR+LM  G++  TGNT   N+  C NG GN F  CGG+ +N+++C
Subjt:  MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATY-GEATAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRC

Query:  NAYNRGVPC
        N Y+   PC
Subjt:  NAYNRGVPC

KAA0039430.1 hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa]1.1e-2664.81Show/hide
Query:  MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCN
        MG R SF G+  VV M L TI CSSH CRGSVL KANATY    T ELLIY DI RYLMF+G +AKTG T ++NV ACGNGAGNSF  C GS  NKK+CN
Subjt:  MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCN

Query:  AYNRGVPC
        AY     C
Subjt:  AYNRGVPC

KAG6578548.1 hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia]8.0e-2253.77Show/hide
Query:  MGGRCSFWGVAVVAMTLTTILCSSHCCRGSVLTKANATYGEATAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAY
        MGGRCSFWGVAV A+ +T ILCSS+  R S L +ANATYGE   ELL+  +I R+L F   +  T  T N  V++CGNG GN    C GSP NKK CN+Y
Subjt:  MGGRCSFWGVAVVAMTLTTILCSSHCCRGSVLTKANATYGEATAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAY

Query:  NRGVPC
             C
Subjt:  NRGVPC

KGN52518.1 hypothetical protein Csa_007870 [Cucumis sativus]7.2e-2362.24Show/hide
Query:  VAVVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC
        + VV M L TIL SSH CR SVL KANATYG   TAELLIY D+TRYLM+D A++KTG T ++ V  C NG GNSF  CGGS  NKK+CNAY     C
Subjt:  VAVVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC

KGN52519.1 hypothetical protein Csa_008872 [Cucumis sativus]1.2e-2054.13Show/hide
Query:  MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRC
        MGGR SF G+ +V + +   TIL SS+ CRGS+L KANAT G   T EL+I  DITRYL+F GA A TG T + N+  CGNGAGN+F  CGG+ +N ++C
Subjt:  MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRC

Query:  NAYNRGVPC
        NAY     C
Subjt:  NAYNRGVPC

TrEMBL top hitse value%identityAlignment
A0A0A0KSJ4 Uncharacterized protein3.5e-2362.24Show/hide
Query:  VAVVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC
        + VV M L TIL SSH CR SVL KANATYG   TAELLIY D+TRYLM+D A++KTG T ++ V  C NG GNSF  CGGS  NKK+CNAY     C
Subjt:  VAVVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC

A0A0A0KUG7 Uncharacterized protein5.6e-2154.13Show/hide
Query:  MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRC
        MGGR SF G+ +V + +   TIL SS+ CRGS+L KANAT G   T EL+I  DITRYL+F GA A TG T + N+  CGNGAGN+F  CGG+ +N ++C
Subjt:  MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRC

Query:  NAYNRGVPC
        NAY     C
Subjt:  NAYNRGVPC

A0A0A0KVT8 Uncharacterized protein7.8e-2359.26Show/hide
Query:  MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCN
        MG R SF G+  VV + L TIL SSH CRGSVL KANATY    T EL+IYGDI R+LM  G++AKTG T  RNV ACGNGAGN++  CGGS  N+ +C+
Subjt:  MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCN

Query:  AYNRGVPC
        AY     C
Subjt:  AYNRGVPC

A0A5D3BNE4 Uncharacterized protein1.2e-2052.29Show/hide
Query:  MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATY-GEATAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRC
        MGGR SF G+ +V + +   TIL SS+ CRGSVL KANATY G +T E++IY DITR+LM  G++  TGNT   N+  C NG GN F  CGG+ +N+++C
Subjt:  MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATY-GEATAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRC

Query:  NAYNRGVPC
        N Y+   PC
Subjt:  NAYNRGVPC

A0A5D3BR80 Uncharacterized protein5.2e-2764.81Show/hide
Query:  MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCN
        MG R SF G+  VV M L TI CSSH CRGSVL KANATY    T ELLIY DI RYLMF+G +AKTG T ++NV ACGNGAGNSF  C GS  NKK+CN
Subjt:  MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCN

Query:  AYNRGVPC
        AY     C
Subjt:  AYNRGVPC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGCCGTTGTTCGTTTTGGGGAGTAGCGGTGGTGGCGATGACGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCCAACGC
CACCTACGGCGAGGCGACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGATGGAGCCGAAGCCAAGACAGGTAATACCCCGAACCGGAACGTCG
AAGCTTGTGGCAACGGTGCCGGAAACTCTTTTGAAGCCTGCGGTGGTAGCCCCGACAATAAAAAACGTTGCAACGCATACAATCGCGGTGTCCCTTGCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGCCGTTGTTCGTTTTGGGGAGTAGCGGTGGTGGCGATGACGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCCAACGC
CACCTACGGCGAGGCGACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGATGGAGCCGAAGCCAAGACAGGTAATACCCCGAACCGGAACGTCG
AAGCTTGTGGCAACGGTGCCGGAAACTCTTTTGAAGCCTGCGGTGGTAGCCCCGACAATAAAAAACGTTGCAACGCATACAATCGCGGTGTCCCTTGCAAATAA
Protein sequenceShow/hide protein sequence
MGGRCSFWGVAVVAMTLTTILCSSHCCRGSVLTKANATYGEATAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPCK