; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G06020 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G06020
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionComponent of oligomeric Golgi complex 2
Genome locationClcChr11:5894689..5896480
RNA-Seq ExpressionClc11G06020
SyntenyClc11G06020
Gene Ontology termsGO:0007030 - Golgi organization (biological process)
GO:0015031 - protein transport (biological process)
GO:0060178 - regulation of exocyst localization (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0031410 - cytoplasmic vesicle (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009316 - COG complex component, COG2
IPR024602 - Conserved oligomeric Golgi complex, subunit 2, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584147.1 Conserved oligomeric Golgi complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]2.2e-7693.29Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFR SVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

KAG7019738.1 Conserved oligomeric Golgi complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]2.2e-7693.29Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFR SVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

XP_022924123.1 conserved oligomeric Golgi complex subunit 2 [Cucurbita moschata]2.2e-7693.29Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFR SVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

XP_031743585.1 conserved oligomeric Golgi complex subunit 2 [Cucumis sativus]7.6e-7793.9Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRSAND FSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

XP_038884882.1 LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 2 [Benincasa hispida]4.4e-7793.29Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESY+S+LRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

TrEMBL top hitse value%identityAlignment
A0A0A0KBT8 Component of oligomeric Golgi complex 23.7e-7793.9Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRSAND FSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

A0A5A7U0M8 Component of oligomeric Golgi complex 26.9e-7692.68Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRSAND FSDPLDSHPLWFKP+LFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFR SVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

A0A5D3BRV0 Component of oligomeric Golgi complex 26.9e-7692.68Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRSAND FSDPLDSHPLWFKP+LFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFR SVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

A0A6J1EBH3 Component of oligomeric Golgi complex 21.1e-7693.29Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFR SVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

A0A6J1KHC6 Component of oligomeric Golgi complex 22.4e-7692.68Show/hide
Query:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
        MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA
Subjt:  MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRA

Query:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP
        PLVELREKIEQFR SVEFSLS+LQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Subjt:  PLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP

SwissProt top hitse value%identityAlignment
F4JRR1 Conserved oligomeric Golgi complex subunit 24.5e-6480.5Show/hide
Query:  MADLI---PPPH---RSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAA
        M+DL+   P P    RSA DFFSDP DSHPLWFKP LFLSPNFDSESYISELRTFVPFDTLRS+L SHL++LNREL+DLINRDY DFVNLSTKLVD++AA
Subjt:  MADLI---PPPH---RSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAA

Query:  VVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV
        VVRMRAPL+ELREKI  FRGSVE +L AL+NGL+QRS+AA+AREVLELLLDTFHVVSKV
Subjt:  VVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV

Q14746 Conserved oligomeric Golgi complex subunit 24.7e-1330.37Show/hide
Query:  PLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEF
        P     L F  D F+  +FD + ++S+ R  V  + LR  L  +   L   +++LIN+DY DFVNLST LV ++ A+ ++  PL +LRE++   R SV  
Subjt:  PLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEF

Query:  SLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV
         + A+   + ++ +    +  +  L+     V K+
Subjt:  SLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV

Q54UC2 Conserved oligomeric Golgi complex subunit 22.7e-0823.53Show/hide
Query:  PLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSAL
        PL F  D+F S  F+ + +IS+ R  V  ++++  L  +   L+ ELI+LIN++Y  F +LST LV  +  +         ++ +I+ F   +      +
Subjt:  PLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSAL

Query:  QNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSR
        ++ L ++      +++L+L +     ++ + + F +
Subjt:  QNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSR

Q921L5 Conserved oligomeric Golgi complex subunit 26.1e-1330.37Show/hide
Query:  PLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEF
        P     L F  D F+  +FD + ++S+ R  V  + LR  L  +   L   +++LIN+DY DFVNLST LV ++ A+ ++  PL +LRE++   R SV  
Subjt:  PLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEF

Query:  SLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV
         + A+   + ++ +    +  +  L+     V K+
Subjt:  SLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV

Q9VF78 Conserved oligomeric Golgi complex subunit 22.6e-1127.21Show/hide
Query:  PPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELR
        P  +SA+        +  L F  + F+  NF  + ++ + R     + LR  L  +L  L   +IDLIN DY DFVNLS  LV ++  +  ++ PL + R
Subjt:  PPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELR

Query:  EKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV
          IE   G ++ +++ L+  L ++ +    +  L+ L   +  ++K+
Subjt:  EKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV

Arabidopsis top hitse value%identityAlignment
AT4G24840.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).3.2e-6580.5Show/hide
Query:  MADLI---PPPH---RSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAA
        M+DL+   P P    RSA DFFSDP DSHPLWFKP LFLSPNFDSESYISELRTFVPFDTLRS+L SHL++LNREL+DLINRDY DFVNLSTKLVD++AA
Subjt:  MADLI---PPPH---RSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAA

Query:  VVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV
        VVRMRAPL+ELREKI  FRGSVE +L AL+NGL+QRS+AA+AREVLELLLDTFHVVSKV
Subjt:  VVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATCTCATTCCACCACCACATAGATCGGCCAACGACTTCTTTTCCGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTT
TGATTCCGAGTCCTACATATCTGAGCTTCGAACATTTGTCCCATTTGACACTCTCCGATCTCAGCTCCACTCTCATCTTTCCGCTCTGAACCGTGAGCTCATTGACTTGA
TCAATCGTGATTATACCGATTTTGTCAACCTGAGCACAAAGCTGGTCGATGTGGAAGCGGCAGTCGTACGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAG
CAATTCAGGGGTTCCGTGGAGTTCTCTCTATCAGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCATCGGCCAGAGAGGTCTTGGAATTGTTGCTCGATACATT
TCACGTCGTCTCGAAGGTCGTGTATGAGTTTAGCAGAAGGGAAAGTGTGCCAGAATTGATCTTTTCCTTTTCAAGGTTGAGTGAAATCAGTAGAGCTGGTTGGACTTCAA
GGTTTTGCTCAGTGAAAGTGTTAGTCTTGTTAATGAATCAAGAGAGGAAAAGGCATCTTCCATTGTCCCAGCTGTGA
mRNA sequenceShow/hide mRNA sequence
CGGTAGTTGATGGTTTAAATTCCAGTCTCCTGCATGAACAAATCTTCTATCCTCTCCAAAATTTGGTATATCGATCCGTGATCTCAATCTGACGTCTCCATTTTCATCGT
TCAAAGTTCTTTGGAGATTGTTCAGGACGTTCGCCACTATTTGAAGCGACCGGAGAACTACTAGGAAAACCAAATACCATGGCGGATCTCATTCCACCACCACATAGATC
GGCCAACGACTTCTTTTCCGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTTTGATTCCGAGTCCTACATATCTGAGCTTCGAA
CATTTGTCCCATTTGACACTCTCCGATCTCAGCTCCACTCTCATCTTTCCGCTCTGAACCGTGAGCTCATTGACTTGATCAATCGTGATTATACCGATTTTGTCAACCTG
AGCACAAAGCTGGTCGATGTGGAAGCGGCAGTCGTACGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGGTTCCGTGGAGTTCTCTCTATC
AGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCATCGGCCAGAGAGGTCTTGGAATTGTTGCTCGATACATTTCACGTCGTCTCGAAGGTCGTGTATGAGTTTA
GCAGAAGGGAAAGTGTGCCAGAATTGATCTTTTCCTTTTCAAGGTTGAGTGAAATCAGTAGAGCTGGTTGGACTTCAAGGTTTTGCTCAGTGAAAGTGTTAGTCTTGTTA
ATGAATCAAGAGAGGAAAAGGCATCTTCCATTGTCCCAGCTGTGA
Protein sequenceShow/hide protein sequence
MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIE
QFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVPELIFSFSRLSEISRAGWTSRFCSVKVLVLLMNQERKRHLPLSQL