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Clc11G06110 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G06110
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionChalcone-flavonone isomerase family protein
Genome locationClcChr11:5999575..6002698
RNA-Seq ExpressionClc11G06110
SyntenyClc11G06110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3478694.1 unnamed protein product [Digitaria exilis]2.6e-0540Show/hide
Query:  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPV----SKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLP
        RQ+ Q+ +  +   S PYT+TG+ R        +ARR + PPP     S+A  R QR   R  EL P A+  A+S+AAR++TM VSKL SL+     LL 
Subjt:  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPV----SKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLP

Query:  LDGAAVVSAS
        L      SA+
Subjt:  LDGAAVVSAS

KAF7830868.1 hypothetical protein G2W53_013201 [Senna tora]3.6e-0768.42Show/hide
Query:  NPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASL
        NP AA   A    VSKANL L  RAH TIE +PRA I+AQS AA IITMFVSKLASL
Subjt:  NPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASL

KAF8716856.1 hypothetical protein HU200_025955 [Digitaria exilis]2.6e-0540Show/hide
Query:  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPV----SKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLP
        RQ+ Q+ +  +   S PYT+TG+ R        +ARR + PPP     S+A  R QR   R  EL P A+  A+S+AAR++TM VSKL SL+     LL 
Subjt:  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPV----SKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLP

Query:  LDGAAVVSAS
        L      SA+
Subjt:  LDGAAVVSAS

KCW47523.1 hypothetical protein EUGRSUZ_K01285 [Eucalyptus grandis]3.4e-1854.55Show/hide
Query:  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYE-FRVLLPLD-
        RQIG SV+ I    +DPYTATGIWR +   +PV A   A    VS  NLRLQR A RT+ELSPRAQI+A S AAR+ITM VSKL SL+YE     +P   
Subjt:  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYE-FRVLLPLD-

Query:  ----GAAVVSASR--RRRWGR
            G    SASR  R RW R
Subjt:  ----GAAVVSASR--RRRWGR

KXG33623.1 hypothetical protein SORBI_3003G338600 [Sorghum bicolor]1.5e-0545.05Show/hide
Query:  RQIGQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKANL-RLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLL
        RQ+ Q+ +  + P +   PYT+TG+ R+A F +P A    A  PP S ++  R QR   R  EL P A+ +A S+AAR++TM VSKLASLL
Subjt:  RQIGQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKANL-RLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLL

TrEMBL top hitse value%identityAlignment
A0A059A153 Uncharacterized protein1.7e-1854.55Show/hide
Query:  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYE-FRVLLPLD-
        RQIG SV+ I    +DPYTATGIWR +   +PV A   A    VS  NLRLQR A RT+ELSPRAQI+A S AAR+ITM VSKL SL+YE     +P   
Subjt:  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYE-FRVLLPLD-

Query:  ----GAAVVSASR--RRRWGR
            G    SASR  R RW R
Subjt:  ----GAAVVSASR--RRRWGR

A0A1B6Q6S2 Uncharacterized protein7.3e-0645.05Show/hide
Query:  RQIGQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKANL-RLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLL
        RQ+ Q+ +  + P +   PYT+TG+ R+A F +P A    A  PP S ++  R QR   R  EL P A+ +A S+AAR++TM VSKLASLL
Subjt:  RQIGQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKANL-RLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLL

A0A287LWU2 Uncharacterized protein1.4e-0444.09Show/hide
Query:  PYTATGIWRNALFFNPV--------AARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVL-LPLDGA
        PYT+ G   +  F +P         AA      PP S A  R  R  HR  ELSP A+  A+S+AAR+ITM VSKLAS L   R     LDGA
Subjt:  PYTATGIWRNALFFNPV--------AARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVL-LPLDGA

A0A368QGZ0 Uncharacterized protein1.4e-0445.78Show/hide
Query:  SRPDSDPYTATGIWRNALFFNPVAA-------RREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLAS
        S P   PYT+TG+ R+A F  P A          +A  PP   A     R AHR  ELSP A  +A+ +AAR+ITM VSKLAS
Subjt:  SRPDSDPYTATGIWRNALFFNPVAA-------RREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLAS

A0A6A6MZC8 Chalcone-flavonone isomerase family protein2.8e-0561.02Show/hide
Query:  FNPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLL
        F PVAA+R A    VSKANL +  +A RT+E S  A INAQS A  +ITMFVSKLASL+
Subjt:  FNPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCCGTTTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAAC
CAGGCAGATAGGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGC
GCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCTCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCG
GCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCGCCGTCGTATCGGCGTCGAGGAGGAGGCG
GTGGGGACGGTCACGGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCCGTTTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAAC
CAGGCAGATAGGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGC
GCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCTCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCG
GCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCGCCGTCGTATCGGCGTCGAGGAGGAGGCG
GTGGGGACGGTCACGGTGGTGATCGGACTCCATCGTCATAGGAGCTGCTAACTACTTCAAAACAACAACAGGACTGATTCTGTCAGCAAATTGTGAGACGCAATTTTAGA
GAGGAAGGATGAATTAGAATCTTCTCTCTAAATCTAAATTTGTATATGAAAAACATGTTTCTAAAAAAAGATCAATAATGATAGCGTTGGTAAAATCAATATGCCAATGA
ATATAGATGGAATTTTTTGTAATATAGAAGTATATAATATGATGACGGCTTAATTGATAAATTGTTAATTGTAAATTCTATTATAATTCAATTGATTAAGACATTATATG
TTATTGACTAAGAGATTGACTATCTCATTTGTTAAAAATTAATTTTTTTTTTAATAGTTTGAATTAAAGTTAAAATTGATCCGTTTAAATTTATT
Protein sequenceShow/hide protein sequence
MDFRLVGFRLQLPPILKPTVVRAVIDDMLDTTNGKPTRQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNA
ARIITMFVSKLASLLYEFRVLLPLDGAAVVSASRRRRWGRSRW