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Clc11G06140 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G06140
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S26
Genome locationClcChr11:6027933..6032448
RNA-Seq ExpressionClc11G06140
SyntenyClc11G06140
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0019430 - removal of superoxide radicals (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004784 - superoxide dismutase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000892 - Ribosomal protein S26e
IPR038551 - Ribosomal protein S26e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599946.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]3.4e-3697.47Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSL
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQR L
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSL

XP_008456772.1 PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo]3.4e-36100Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

XP_022941874.1 40S ribosomal protein S26-3-like [Cucurbita moschata]3.4e-3697.47Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSL
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQR L
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSL

XP_024026041.1 40S ribosomal protein S26-1-like [Morus notabilis]1.5e-3698.73Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSL
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR L
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSL

XP_038884330.1 40S ribosomal protein S26-3-like [Benincasa hispida]3.4e-36100Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

TrEMBL top hitse value%identityAlignment
A0A1Q3B3V8 Superoxide dismutase1.7e-36100Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

A0A1S3C4P8 40S ribosomal protein S261.7e-36100Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

A0A5A7UA01 40S ribosomal protein S261.7e-36100Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

A0A5A7VIJ0 40S ribosomal protein S263.7e-3698.7Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQR
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

A0A6J1FPQ0 40S ribosomal protein S261.7e-3697.47Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSL
        SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQR L
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSL

SwissProt top hitse value%identityAlignment
P49206 40S ribosomal protein S26-11.4e-3287.01Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

P49216 40S ribosomal protein S261.0e-3079.22Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R PP+R
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

Q8LPJ7 40S ribosomal protein S26-21.4e-3287.01Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

Q9GT45 40S ribosomal protein S263.3e-2666.28Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSLDAGMMRQ
        +NC +C PKDKAIK+F++RNIVE AAVRD+ +A VY  Y LPKLYAK+ YCVSCAIHS VVR RS+  RR R PPQRS    M RQ
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSLDAGMMRQ

Q9LYK9 40S ribosomal protein S26-31.4e-3287.01Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

Arabidopsis top hitse value%identityAlignment
AT2G40510.1 Ribosomal protein S26e family protein9.9e-3487.01Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

AT2G40590.1 Ribosomal protein S26e family protein9.9e-3487.01Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR

AT3G56340.1 Ribosomal protein S26e family protein9.9e-3487.01Show/hide
Query:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR
        SNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  SNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTCACACACCGATGTGTAGATTCTTTGGAACCTGGTGTTCTTGGGTGGGATTATTCAGACTTGTCTCCTATTGGAGTAGACTTCAAGGTGATGACCAGTCAGA
GCTCTTGAAGCCGACGAGCTCTTTGTTTCTCTCTGGTTCGCTCGTCCATCTAAGAAACTACAACCATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGC
GGACACGTGAAATTTATCCGCTGTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATTGTGGAACAGGCAGCTGTTAGGGAT
GTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATCCACTCTCACGTTGTAAGGGTTCGATCACG
CACTGACAGGAGGAACCGTGAGCCTCCACAGCGCTCATTAGACGCAGGGATGATGCGCCAAAGCCTGGACAGCCAGGACAGGCCCCGCGTGTTGGAGCTGGTGGAGCTCC
ACCCCCGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTCACACACCGATGTGTAGATTCTTTGGAACCTGGTGTTCTTGGGTGGGATTATTCAGACTTGTCTCCTATTGGAGTAGACTTCAAGGTGATGACCAGTCAGA
GCTCTTGAAGCCGACGAGCTCTTTGTTTCTCTCTGGTTCGCTCGTCCATCTAAGAAACTACAACCATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGC
GGACACGTGAAATTTATCCGCTGTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATTGTGGAACAGGCAGCTGTTAGGGAT
GTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATCCACTCTCACGTTGTAAGGGTTCGATCACG
CACTGACAGGAGGAACCGTGAGCCTCCACAGCGCTCATTAGACGCAGGGATGATGCGCCAAAGCCTGGACAGCCAGGACAGGCCCCGCGTGTTGGAGCTGGTGGAGCTCC
ACCCCCGTGCTTGA
Protein sequenceShow/hide protein sequence
MASHTPMCRFFGTWCSWVGLFRLVSYWSRLQGDDQSELLKPTSSLFLSGSLVHLRNYNHDFQAQEWWTQQAWTRTREIYPLSNCGKCCPKDKAIKRFLVRNIVEQAAVRD
VQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRSLDAGMMRQSLDSQDRPRVLELVELHPRA