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Clc11G06210 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G06210
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionhistone H4
Genome locationClcChr11:6083149..6084337
RNA-Seq ExpressionClc11G06210
SyntenyClc11G06210
Gene Ontology termsGO:0006352 - DNA-templated transcription, initiation (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003958 - NADPH-hemoprotein reductase activity (molecular function)
GO:0010181 - FMN binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
GO:0050660 - flavin adenine dinucleotide binding (molecular function)
GO:0050661 - NADP binding (molecular function)
InterPro domainsIPR001951 - Histone H4
IPR009072 - Histone-fold
IPR019809 - Histone H4, conserved site
IPR035425 - CENP-T/Histone H4, histone fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8507273.1 Hereditary hemochromatosis protein [Galemys pyrenaicus]2.7e-4890.18Show/hide
Query:  RRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL
        +R++P+  +  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYAL
Subjt:  RRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL

Query:  KRQGRTLYGFGG
        KRQGRTLYGFGG
Subjt:  KRQGRTLYGFGG

MBA0569763.1 hypothetical protein [Gossypium lobatum]1.6e-4884.92Show/hide
Query:  CQIWPSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA
        C +  S+  FG   R +  +  I  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA
Subjt:  CQIWPSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA

Query:  RRKTVTAMDVVYALKRQGRTLYGFGG
        RRKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  RRKTVTAMDVVYALKRQGRTLYGFGG

XP_026072634.1 histone H4-like [Carassius auratus]3.5e-4895.33Show/hide
Query:  KFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR
        KF+I  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGR
Subjt:  KFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR

Query:  TLYGFGG
        TLYGFGG
Subjt:  TLYGFGG

XP_039501411.1 uncharacterized protein LOC120457983 [Drosophila santomea]4.5e-4886.07Show/hide
Query:  SEVVFGVSCRRRSPKFV-IRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
        S+ +F   CR   P  + I  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Subjt:  SEVVFGVSCRRRSPKFV-IRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT

Query:  VTAMDVVYALKRQGRTLYGFGG
        VTAMDVVYALKRQGRTLYGFGG
Subjt:  VTAMDVVYALKRQGRTLYGFGG

XP_041330191.1 uncharacterized protein LOC121357181 [Pyrgilauda ruficollis]1.6e-4885.25Show/hide
Query:  PSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
        PS  ++G    R  P      GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Subjt:  PSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT

Query:  VTAMDVVYALKRQGRTLYGFGG
        VTAMDVVYALKRQGRTLYGFGG
Subjt:  VTAMDVVYALKRQGRTLYGFGG

TrEMBL top hitse value%identityAlignment
A0A287GFE9 Histone H41.7e-4886.07Show/hide
Query:  PSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
        P  + F +    RS +     GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Subjt:  PSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT

Query:  VTAMDVVYALKRQGRTLYGFGG
        VTAMDVVYALKRQGRTLYGFGG
Subjt:  VTAMDVVYALKRQGRTLYGFGG

A0A5N6N0X3 NADPH--cytochrome P450 reductase3.8e-4896.26Show/hide
Query:  KFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR
        KF +  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR
Subjt:  KFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR

Query:  TLYGFGG
        TLYGFGG
Subjt:  TLYGFGG

A0A6P6KK29 Histone H41.7e-4895.33Show/hide
Query:  KFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR
        KF+I  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGR
Subjt:  KFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR

Query:  TLYGFGG
        TLYGFGG
Subjt:  TLYGFGG

A0A7J8MYN0 Histone H47.6e-4984.92Show/hide
Query:  CQIWPSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA
        C +  S+  FG   R +  +  I  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA
Subjt:  CQIWPSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA

Query:  RRKTVTAMDVVYALKRQGRTLYGFGG
        RRKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  RRKTVTAMDVVYALKRQGRTLYGFGG

A0A7J8QCG8 Histone H42.9e-4884.13Show/hide
Query:  CQIWPSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA
        C +  S+  F +  R +  +  I  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA
Subjt:  CQIWPSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA

Query:  RRKTVTAMDVVYALKRQGRTLYGFGG
        RRKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  RRKTVTAMDVVYALKRQGRTLYGFGG

SwissProt top hitse value%identityAlignment
P59259 Histone H41.5e-49100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G

P62785 Histone H4 variant TH0111.5e-49100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G

Q6LAF3 Histone H41.5e-49100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G

Q6PMI5 Histone H41.5e-49100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G

Q6WZ83 Histone H41.5e-49100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G

Arabidopsis top hitse value%identityAlignment
AT1G07660.1 Histone superfamily protein1.0e-50100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G

AT1G07820.1 Histone superfamily protein1.0e-50100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G

AT1G07820.2 Histone superfamily protein1.0e-50100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G

AT2G28740.1 histone H41.0e-50100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G

AT3G45930.1 Histone superfamily protein1.0e-50100Show/hide
Query:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
        GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Subjt:  GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG

Query:  G
        G
Subjt:  G


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCCAGAGTTGGACGCCTGAGGTGGTTGCCGGATTTGGCCATTGGAGGTGGTCGCCAGAAGTTGGTCGTTGAAAAGGGTCGTCAGAAGTGGTTGCCAAATTTGGC
CGGCGGAAGTGGTTGCCAGATTTGGCCCTCAGAGGTGGTCTTCGGAGTTAGCTGTCGGAGGAGGTCGCCGAAGTTTGTCATCAGAGGTGGCCGTGGAAAAGGAGGCAAAG
GATTGGGAAAAGGAGGAGCAAAGCGTCATAGAAAGGTTTTGAGGGATAACATTCAAGGAATTACGAAGCCTGCAATTCGGCGATTGGCTCGTAGAGGCGGTGTGAAGCGA
ATCAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATCTTCCTTGAGAATGTGATTCGCGATGCCGTGACCTACACAGAGCACGCCAGGAGGAAGACGGTGAC
CGCCATGGATGTCGTTTATGCGCTGAAAAGGCAGGGAAGGACCTTGTACGGTTTCGGTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCCAGAGTTGGACGCCTGAGGTGGTTGCCGGATTTGGCCATTGGAGGTGGTCGCCAGAAGTTGGTCGTTGAAAAGGGTCGTCAGAAGTGGTTGCCAAATTTGGC
CGGCGGAAGTGGTTGCCAGATTTGGCCCTCAGAGGTGGTCTTCGGAGTTAGCTGTCGGAGGAGGTCGCCGAAGTTTGTCATCAGAGGTGGCCGTGGAAAAGGAGGCAAAG
GATTGGGAAAAGGAGGAGCAAAGCGTCATAGAAAGGTTTTGAGGGATAACATTCAAGGAATTACGAAGCCTGCAATTCGGCGATTGGCTCGTAGAGGCGGTGTGAAGCGA
ATCAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATCTTCCTTGAGAATGTGATTCGCGATGCCGTGACCTACACAGAGCACGCCAGGAGGAAGACGGTGAC
CGCCATGGATGTCGTTTATGCGCTGAAAAGGCAGGGAAGGACCTTGTACGGTTTCGGTGGTTAG
Protein sequenceShow/hide protein sequence
MVARVGRLRWLPDLAIGGGRQKLVVEKGRQKWLPNLAGGSGCQIWPSEVVFGVSCRRRSPKFVIRGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKR
ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG