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Clc11G06260 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G06260
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionHIG1 domain-containing protein
Genome locationClcChr11:6135005..6135908
RNA-Seq ExpressionClc11G06260
SyntenyClc11G06260
Gene Ontology termsGO:0033617 - mitochondrial respiratory chain complex IV assembly (biological process)
GO:0005746 - mitochondrial respirasome (cellular component)
GO:0031305 - integral component of mitochondrial inner membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain
IPR040153 - Respiratory supercomplex factor 2, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052029.1 respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa]8.0e-3388.37Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEA-PASPGGK
        MEAIQAWVS+HKLTT+GALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+NK   DRSEA P S GGK
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEA-PASPGGK

KAG6578469.1 hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia]2.3e-3287.5Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPAS---PGGK
        MEAIQAWVS HKLT++GALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENK AG RSEAP S   PGG+
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPAS---PGGK

KAG7016034.1 BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]8.8e-3291.36Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPAS
        MEAIQAWVS HKLT++GALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENK AG RSEAP S
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPAS

XP_004138401.1 uncharacterized protein LOC101218681 [Cucumis sativus]2.7e-3389.29Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASPGG
        MEAIQAWVS+HKLTT+GALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+NK+  DRSEAP   GG
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASPGG

XP_038886475.1 uncharacterized protein LOC120076661 [Benincasa hispida]5.0e-3592.94Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASPGGK
        MEAIQ WVS+HKLTT+GALWASGIGASLAYTRSRT LKPSLRLIHARMHAQALTLAVLSGAAVYHYYE+KLAG RSEAPASPGGK
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASPGGK

TrEMBL top hitse value%identityAlignment
A0A0A0K7T4 HIG1 domain-containing protein1.3e-3389.29Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASPGG
        MEAIQAWVS+HKLTT+GALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+NK+  DRSEAP   GG
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASPGG

A0A5A7UEZ1 Respiratory supercomplex factor 2-like protein3.9e-3388.37Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEA-PASPGGK
        MEAIQAWVS+HKLTT+GALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+NK   DRSEA P S GGK
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEA-PASPGGK

A0A5J5AU49 HIG1 domain-containing protein3.0e-2576.83Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASP
        MEA+Q+WVS+HKLT++G LWAS IGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSGAA YHYYE K AG++ +  ASP
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASP

A0A7J7I509 HIG1 domain-containing protein7.1e-2781.82Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSE
        MEA+Q+WVS+HKLT++G LWASGIGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYE +L G+ SE
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSE

W9QXG0 BTB/POZ domain-containing protein3.0e-2575.9Show/hide
Query:  MEAIQAWVSDHKLTTVGALWASGIGASLAY-TRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASP
        MEAIQ+WVS+HKLT++GALWASGIGASLAY + SR+P KPSLRLIHARMHAQALTLAVLSGAA+YHYYE ++    +E  ASP
Subjt:  MEAIQAWVSDHKLTTVGALWASGIGASLAY-TRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G05550.1 Hypoxia-responsive family protein7.0e-1962.32Show/hide
Query:  EAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENK
        E I+ WVSDHKL TVG LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GAAV  YY++K
Subjt:  EAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENK

AT5G27760.1 Hypoxia-responsive family protein2.9e-1758.21Show/hide
Query:  IQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENK
        I+ W+ +HKL TVG LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA   YY++K
Subjt:  IQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTATTCAAGCCTGGGTTTCAGATCACAAACTCACCACCGTTGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCTTATACCCGATCAAGAACTCCCCT
CAAGCCAAGTCTCCGTCTTATCCATGCTAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCTGCCGTCTACCACTACTACGAGAACAAACTCGCCGGCG
ACCGATCGGAAGCTCCCGCTTCCCCTGGAGGGAAATGA
mRNA sequenceShow/hide mRNA sequence
GCAGAAACCAAGGTCTATCCAAGGGCTGAGAATGGATGGGGGAAATTTTGAGAAGAAACCGGAAACGGAAAAGCCTCTTGTTTCCAAGAAAAACAGAGGAATGCTCCGTT
GAATCAAGGGGCTGATGCCGATCTCTAATATTTCTATATATATATAAATAATGTTCTTGTCTTCATGCTTCCCTCCTCACTTCAAATCTTCACCTAATTTTTTCTTCTAG
TAAACAACAACAACAACAATGGAAGCTATTCAAGCCTGGGTTTCAGATCACAAACTCACCACCGTTGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCTTATAC
CCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCTAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCTGCCGTCTACCACTACTACG
AGAACAAACTCGCCGGCGACCGATCGGAAGCTCCCGCTTCCCCTGGAGGGAAATGAAATGGATAAGCCGAGAATGGTATTCTAAAGGGATGAATCATTTTATGTAAATTA
AATCAAGGATCTCGGTTACTCTGTGTTTTGCTACTCCTACTTAAGTAGTAGCATATATTTCACAAAATATTCAGAGGCCAATCTTAAAGCTAATTAAAGAGACTATGCAA
AATTTCTAATACTATGCCGGTCGTGTGATTTTTTTTTTAA
Protein sequenceShow/hide protein sequence
MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASPGGK