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Clc11G06265 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G06265
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPolyprotein
Genome locationClcChr11:6141742..6142185
RNA-Seq ExpressionClc11G06265
SyntenyClc11G06265
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR028919 - Viral movement protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653180.1 hypothetical protein Csa_019682, partial [Cucumis sativus]5.3e-1639.6Show/hide
Query:  QIAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        Q+A+IE++L+NW +PKL+ KE++  +TF+F +   + I E  + +     +++L P + + + R +F++LH+  VQVAL+P+FR  LD  V   LRDKRH
Subjt:  QIAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

Query:  K
        +
Subjt:  K

TYJ98087.1 Enzymatic polyprotein [Cucumis melo var. makuwa]1.2e-1540.4Show/hide
Query:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +     +I+L P + +LK R  F++LH+G VQVAL+P+FR  LD  V   LRDKRH
Subjt:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

TYK04698.1 polyprotein [Cucumis melo var. makuwa]2.4e-1639.39Show/hide
Query:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +   + +I+L P++ + K + +F++LH+G VQVAL+P+FR  LD LV   LRDKRH
Subjt:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

TYK28080.1 movement protein [Cucumis melo var. makuwa]1.2e-1540.4Show/hide
Query:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +     +I+L P + +LK R  F++LH+G VQVAL+P+FR  LD  V   LRDKRH
Subjt:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

XP_016900528.1 PREDICTED: uncharacterized protein LOC107990934 [Cucumis melo]2.4e-1639.39Show/hide
Query:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +   + +I+L P++ + K + +F++LH+G VQVAL+P+FR  LD LV   LRDKRH
Subjt:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

TrEMBL top hitse value%identityAlignment
A0A0A0M024 Uncharacterized protein2.6e-1639.6Show/hide
Query:  QIAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        Q+A+IE++L+NW +PKL+ KE++  +TF+F +   + I E  + +     +++L P + + + R +F++LH+  VQVAL+P+FR  LD  V   LRDKRH
Subjt:  QIAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

Query:  K
        +
Subjt:  K

A0A1S4DX30 uncharacterized protein LOC1079909341.1e-1639.39Show/hide
Query:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +   + +I+L P++ + K + +F++LH+G VQVAL+P+FR  LD LV   LRDKRH
Subjt:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

A0A5D3BG41 Enzymatic polyprotein5.7e-1640.4Show/hide
Query:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +     +I+L P + +LK R  F++LH+G VQVAL+P+FR  LD  V   LRDKRH
Subjt:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

A0A5D3C0A5 Polyprotein1.1e-1639.39Show/hide
Query:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +   + +I+L P++ + K + +F++LH+G VQVAL+P+FR  LD LV   LRDKRH
Subjt:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

A0A5D3DXV6 Movement protein5.7e-1640.4Show/hide
Query:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH
        +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +     +I+L P + +LK R  F++LH+G VQVAL+P+FR  LD  V   LRDKRH
Subjt:  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTCCTAAGAAAGATTCTATTTAAGAAGGCTCCAACAAAGGAGCTTAGTCAACATGAAGTAGAGGAGCAACATAAAGCTTCCTCTAATGATGTCAATCTCACTAA
TGAATATTTGCAAATAGCAAAGATTGAGCATCAACTTCAGAATTGGAGACTACCCAAATTAGATACAAAAGAAATTTTCGCACATAGCACCTTTAGTTTCAAAGAAAATT
TGCGTGTCAAAATAGTCGAAAGAAAAATACCAGTCTACGGAAGCATAGATTCAATTCAATTATTTCCAAGAGATGATATCTTAAAATATAGGAGCGAATTTGAATTTCTT
CACGTAGGAGCAGTGCAAGTGGCACTAAGACCAATGTTTAGATCAGTATTAGATACTCTTGTTCTTGCAATCCTTAGAGATAAGAGGCATAAGACTTTGCAAACTCCCTT
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTCCTAAGAAAGATTCTATTTAAGAAGGCTCCAACAAAGGAGCTTAGTCAACATGAAGTAGAGGAGCAACATAAAGCTTCCTCTAATGATGTCAATCTCACTAA
TGAATATTTGCAAATAGCAAAGATTGAGCATCAACTTCAGAATTGGAGACTACCCAAATTAGATACAAAAGAAATTTTCGCACATAGCACCTTTAGTTTCAAAGAAAATT
TGCGTGTCAAAATAGTCGAAAGAAAAATACCAGTCTACGGAAGCATAGATTCAATTCAATTATTTCCAAGAGATGATATCTTAAAATATAGGAGCGAATTTGAATTTCTT
CACGTAGGAGCAGTGCAAGTGGCACTAAGACCAATGTTTAGATCAGTATTAGATACTCTTGTTCTTGCAATCCTTAGAGATAAGAGGCATAAGACTTTGCAAACTCCCTT
TTAG
Protein sequenceShow/hide protein sequence
MSLLRKILFKKAPTKELSQHEVEEQHKASSNDVNLTNEYLQIAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFL
HVGAVQVALRPMFRSVLDTLVLAILRDKRHKTLQTPF