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Clc11G06360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G06360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionHeavy metal transport/detoxification superfamily protein
Genome locationClcChr11:6224541..6225269
RNA-Seq ExpressionClc11G06360
SyntenyClc11G06360
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006121 - Heavy metal-associated domain, HMA
IPR036163 - Heavy metal-associated domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052042.1 superoxide dismutase 1 copper chaperone [Cucumis melo var. makuwa]2.5e-2584.72Show/hide
Query:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDN
        +VVELKVFLHC+ECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIRKTA+PWQ DE++N
Subjt:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDN

KAE8646572.1 hypothetical protein Csa_004951, partial [Cucumis sativus]8.7e-2684.62Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY
        VVELKVFLHCEECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIRKTAIPWQ DE    ++NINY
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY

XP_004138408.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Cucumis sativus]8.7e-2684.62Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY
        VVELKVFLHCEECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIRKTAIPWQ DE    ++NINY
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY

XP_008456748.1 PREDICTED: superoxide dismutase 1 copper chaperone [Cucumis melo]4.3e-2585.92Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDN
        VVELKVFLHC+ECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIRKTA+PWQ DE++N
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDN

XP_022133451.1 copper transport protein ATX1 [Momordica charantia]1.8e-2688.16Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNI
        VVELKV LHCE+CIKKILKAIKKIQDIETYNVD QLNKVTVTGNVT EEVIKVL KI KTAIPWQ DEV+NQV+NI
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNI

TrEMBL top hitse value%identityAlignment
A0A0A0K8N1 HMA domain-containing protein4.2e-2684.62Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY
        VVELKVFLHCEECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIRKTAIPWQ DE    ++NINY
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY

A0A1S3C423 superoxide dismutase 1 copper chaperone2.1e-2585.92Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDN
        VVELKVFLHC+ECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIRKTA+PWQ DE++N
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDN

A0A2I4ER70 heavy metal-associated isoprenylated plant protein 451.8e-2181.16Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEV
        VVE+KV LHCEECIKKILKAIKK++DIETYNVD QLNKVTVTGN+T EEVI+VLQKI KTA  W+GDE+
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEV

A0A5D3C2A2 Superoxide dismutase 1 copper chaperone1.2e-2584.72Show/hide
Query:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDN
        +VVELKVFLHC+ECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIRKTA+PWQ DE++N
Subjt:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDN

A0A6J1BV52 copper transport protein ATX18.5e-2788.16Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNI
        VVELKV LHCE+CIKKILKAIKKIQDIETYNVD QLNKVTVTGNVT EEVIKVL KI KTAIPWQ DEV+NQV+NI
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNI

SwissProt top hitse value%identityAlignment
B3H6D0 Heavy metal-associated isoprenylated plant protein 451.9e-0742.19Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPW
        +VEL V + C+ C KK+ +AI K+  ++T  +D+   KVTVTG V  EEV+K++++  +TA  W
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPW

F4JZL7 Heavy metal-associated isoprenylated plant protein 331.0e-0541.67Show/hide
Query:  LKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPW---QGDEVDNQ
        LKV +HC+ C +K+ K ++KI+ + T  +D +L KVTV+GNV    +IK L K  K A  W   +G   +NQ
Subjt:  LKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPW---QGDEVDNQ

Q58FZ0 Protein SODIUM POTASSIUM ROOT DEFECTIVE 21.0e-0538.98Show/hide
Query:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR
        +VV LKV LHC  C  K+ K + ++Q + ++N+D    KVTVTG++T  E++  + K++
Subjt:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR

Q84J88 Heavy metal-associated isoprenylated plant protein 365.5e-0738.75Show/hide
Query:  YEVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY
        Y    L+V +HCE C +KI K + KI  + T N+D++  KVTV GNV  E +IK + K  + A  W     +N  ++ NY
Subjt:  YEVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY

Q8LDS4 Protein SODIUM POTASSIUM ROOT DEFECTIVE 17.9e-0640.68Show/hide
Query:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR
        +VV L+V LHC+ C  K+ K + K++ + +YN+D    KVTVTG+VT   V+  + K++
Subjt:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR

Arabidopsis top hitse value%identityAlignment
AT3G56891.1 Heavy metal transport/detoxification superfamily protein1.3e-0842.19Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPW
        +VEL V + C+ C KK+ +AI K+  ++T  +D+   KVTVTG V  EEV+K++++  +TA  W
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPW

AT5G02600.1 Heavy metal transport/detoxification superfamily protein5.6e-0740.68Show/hide
Query:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR
        +VV L+V LHC+ C  K+ K + K++ + +YN+D    KVTVTG+VT   V+  + K++
Subjt:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR

AT5G02600.2 Heavy metal transport/detoxification superfamily protein5.6e-0740.68Show/hide
Query:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR
        +VV L+V LHC+ C  K+ K + K++ + +YN+D    KVTVTG+VT   V+  + K++
Subjt:  EVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR

AT5G05365.1 Heavy metal transport/detoxification superfamily protein1.9e-2377.61Show/hide
Query:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGD
        VVELKV LHC+ECI+KILKAIKKI+DIE Y+VD QLNKVTVTGNVTEE+VI+VLQK+RK A+ W  D
Subjt:  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGD

AT5G27690.1 Heavy metal transport/detoxification superfamily protein3.9e-0838.75Show/hide
Query:  YEVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY
        Y    L+V +HCE C +KI K + KI  + T N+D++  KVTV GNV  E +IK + K  + A  W     +N  ++ NY
Subjt:  YEVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGCTATGTTAAAATTATATTATTTCCAGATTCTATTCTTCCTAAATCAAGAATCTCACCTTTATGAGGTGGTGGAACTGAAGGTCTTTTTGCATTGTGAGGAGTG
CATCAAGAAGATTCTCAAAGCCATCAAGAAAATACAAGATATAGAAACATATAATGTAGATATACAGCTGAACAAGGTGACCGTCACAGGCAATGTCACTGAAGAAGAAG
TCATCAAAGTTCTTCAGAAAATTAGGAAAACTGCAATTCCATGGCAAGGTGATGAAGTTGACAATCAAGTCGACAACATTAATTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAGCTATGTTAAAATTATATTATTTCCAGATTCTATTCTTCCTAAATCAAGAATCTCACCTTTATGAGGTGGTGGAACTGAAGGTCTTTTTGCATTGTGAGGAGTG
CATCAAGAAGATTCTCAAAGCCATCAAGAAAATACAAGATATAGAAACATATAATGTAGATATACAGCTGAACAAGGTGACCGTCACAGGCAATGTCACTGAAGAAGAAG
TCATCAAAGTTCTTCAGAAAATTAGGAAAACTGCAATTCCATGGCAAGGTGATGAAGTTGACAATCAAGTCGACAACATTAATTACTAG
Protein sequenceShow/hide protein sequence
MLAMLKLYYFQILFFLNQESHLYEVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY