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Clc11G06570 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G06570
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPolyprotein
Genome locationClcChr11:6435580..6436093
RNA-Seq ExpressionClc11G06570
SyntenyClc11G06570
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039552.1 Peptidase_A3 domain-containing protein [Cucumis melo var. makuwa]4.8e-0933.08Show/hide
Query:  QQKTVLKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIEL-------------ATAYV-----------LIFEF
        Q+KT+      GLP++DP +PI+QPN+L I +  +    L +E+ +KL+     K     S K E+             AT+Y+           L   F
Subjt:  QQKTVLKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIEL-------------ATAYV-----------LIFEF

Query:  TGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN
         GNL+SWWHN LTD +R  I  A      Q  N
Subjt:  TGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN

KAA0041640.1 polyprotein [Cucumis melo var. makuwa]7.1e-1333.33Show/hide
Query:  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE---------------------------------------------
        P +P  DP +PI QPN+  IG LK+DP  +L EINK+LA F  +K     S  IE                                             
Subjt:  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE---------------------------------------------

Query:  -------------------------LATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEG
                                 LA A ++I  FTGNL+SWWHNQLT+ +R  ILTATK VV+QEG
Subjt:  -------------------------LATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEG

KAA0054117.1 Enzymatic polyprotein [Cucumis melo var. makuwa]9.6e-1030.18Show/hide
Query:  LKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDK----------------------PEAEASKKIELA----------------
        LK   P +P+I+P +PI QPN+  IG LK D    L EINK+LA    +K                      P+   SK + +A                
Subjt:  LKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDK----------------------PEAEASKKIELA----------------

Query:  ---------------------------TAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN
                                   T  +LI  F GNL+SWWHN LT+ D+  IL AT+TVV+ E +
Subjt:  ---------------------------TAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN

TYK19619.1 polyprotein [Cucumis melo var. makuwa]7.1e-1333.33Show/hide
Query:  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE---------------------------------------------
        P +P  DP +PI QPN+  IG LK+DP  +L EINK+LA F  +K     S  IE                                             
Subjt:  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE---------------------------------------------

Query:  -------------------------LATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEG
                                 LA A ++I  FTGNL+SWWHNQLT+ +R  ILTATK VV+QEG
Subjt:  -------------------------LATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEG

XP_022151716.1 uncharacterized protein LOC111019629 [Momordica charantia]8.1e-0927.13Show/hide
Query:  LPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPE-------------------------------------------------------
        +P +DP +PI QPN+  IG LK DP  L  +IN++L++   +K +                                                       
Subjt:  LPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPE-------------------------------------------------------

Query:  ------------------------------------AEASKKIELATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN
                                            A ++KK  L TA +LI   +GNL+SWWHNQLTD DR  IL ATK VV+QEG+
Subjt:  ------------------------------------AEASKKIELATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN

TrEMBL top hitse value%identityAlignment
A0A5A7T7W5 Peptidase_A3 domain-containing protein2.3e-0933.08Show/hide
Query:  QQKTVLKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIEL-------------ATAYV-----------LIFEF
        Q+KT+      GLP++DP +PI+QPN+L I +  +    L +E+ +KL+     K     S K E+             AT+Y+           L   F
Subjt:  QQKTVLKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIEL-------------ATAYV-----------LIFEF

Query:  TGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN
         GNL+SWWHN LTD +R  I  A      Q  N
Subjt:  TGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN

A0A5A7TEB7 Polyprotein3.4e-1333.33Show/hide
Query:  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE---------------------------------------------
        P +P  DP +PI QPN+  IG LK+DP  +L EINK+LA F  +K     S  IE                                             
Subjt:  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE---------------------------------------------

Query:  -------------------------LATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEG
                                 LA A ++I  FTGNL+SWWHNQLT+ +R  ILTATK VV+QEG
Subjt:  -------------------------LATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEG

A0A5D3D7T3 Polyprotein3.4e-1333.33Show/hide
Query:  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE---------------------------------------------
        P +P  DP +PI QPN+  IG LK+DP  +L EINK+LA F  +K     S  IE                                             
Subjt:  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE---------------------------------------------

Query:  -------------------------LATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEG
                                 LA A ++I  FTGNL+SWWHNQLT+ +R  ILTATK VV+QEG
Subjt:  -------------------------LATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEG

A0A5D3DZV1 Enzymatic polyprotein4.6e-1030.18Show/hide
Query:  LKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDK----------------------PEAEASKKIELA----------------
        LK   P +P+I+P +PI QPN+  IG LK D    L EINK+LA    +K                      P+   SK + +A                
Subjt:  LKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDK----------------------PEAEASKKIELA----------------

Query:  ---------------------------TAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN
                                   T  +LI  F GNL+SWWHN LT+ D+  IL AT+TVV+ E +
Subjt:  ---------------------------TAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN

A0A6J1DFI7 uncharacterized protein LOC1110196293.9e-0927.13Show/hide
Query:  LPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPE-------------------------------------------------------
        +P +DP +PI QPN+  IG LK DP  L  +IN++L++   +K +                                                       
Subjt:  LPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPE-------------------------------------------------------

Query:  ------------------------------------AEASKKIELATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN
                                            A ++KK  L TA +LI   +GNL+SWWHNQLTD DR  IL ATK VV+QEG+
Subjt:  ------------------------------------AEASKKIELATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAACAAAAGACTGTTCTTAAAACAAACTATCCAGGTCTACCAAAGATTGATCCTTACAAGCCAATCATTCAACCAAATACTCTTGCCATTGGAGTACTCAAGAA
TGATCCAGAAGGCTTATTGAAGGAGATCAATAAGAAACTCGCTACCTTCAAATTTGATAAACCAGAAGCTGAAGCCTCTAAGAAGATAGAACTAGCAACAGCTTATGTTC
TAATTTTCGAATTCACTGGAAATTTACAAAGCTGGTGGCATAATCAATTAACGGATCATGATAGAAATGTTATTTTGACAGCAACAAAGACAGTCGTTAGACAAGAAGGC
AACCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAACAAAAGACTGTTCTTAAAACAAACTATCCAGGTCTACCAAAGATTGATCCTTACAAGCCAATCATTCAACCAAATACTCTTGCCATTGGAGTACTCAAGAA
TGATCCAGAAGGCTTATTGAAGGAGATCAATAAGAAACTCGCTACCTTCAAATTTGATAAACCAGAAGCTGAAGCCTCTAAGAAGATAGAACTAGCAACAGCTTATGTTC
TAATTTTCGAATTCACTGGAAATTTACAAAGCTGGTGGCATAATCAATTAACGGATCATGATAGAAATGTTATTTTGACAGCAACAAAGACAGTCGTTAGACAAGAAGGC
AACCCATAA
Protein sequenceShow/hide protein sequence
MDQQKTVLKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIELATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEG
NP