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Clc11G06785 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G06785
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNase H domain-containing protein
Genome locationClcChr11:6732621..6735171
RNA-Seq ExpressionClc11G06785
SyntenyClc11G06785
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038679.1 hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa]6.6e-1752.27Show/hide
Query:  EILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLV
        E  RSQ++W+SP  GFW+ N DASW ++E + G SWVVRDS G+ ILA CE+  + WP++ L+ALA  RGL    DYF H    DVL+
Subjt:  EILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLV

KAA0043266.1 transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa]1.3e-1236.77Show/hide
Query:  NVLVGKISLHMEEFCGGSSVDRLFFRREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKA
        NVL+ +  +  EEF   +SV     RRE   S   W  P  G WK+N DA W +    GGI W+V DS GS IL GCEK             ++I+G   
Subjt:  NVLVGKISLHMEEFCGGSSVDRLFFRREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKA

Query:  LVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSKLSSFVEEMGTLAVSAHVVFF
          D   H     V++E  C +LI A   +  DLS+L+  V+E+ +LAVS  V+ +
Subjt:  LVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSKLSSFVEEMGTLAVSAHVVFF

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.2e-1234.69Show/hide
Query:  LRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINAINHK
        L ++  W  P    W +N DASW +    GGI W++R   G ++LAG   V     +K L+A A++ GL+ L +    G L  + +E+D   + + +N K
Subjt:  LRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINAINHK

Query:  IQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLA-RAAVL
         +DL+K    VEE+  L  S  ++ F    R  NG  H LA RA+VL
Subjt:  IQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLA-RAAVL

XP_023882817.1 uncharacterized protein LOC111995143 [Quercus suber]2.4e-1135.66Show/hide
Query:  WVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSK
        W  P +G +K N DA+ FE    GGI  V+RD  G +I A  +K++L   ++  +ALA  R ++   +      LFDV+ E D + +INAIN      + 
Subjt:  WVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSK

Query:  LSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAVLSGD
            VEE+   ++S     F    R  N L H LAR AVL+ D
Subjt:  LSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAVLSGD

XP_030945898.1 uncharacterized protein LOC115970400 [Quercus lobata]4.1e-1133.33Show/hide
Query:  RREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINA
        + +I+     W  P    +K N DA+ FE  G+ G+  V+RDS G +I A  EK+ L   ++  +ALA  R +    ++    S+F V+VE DC+ +I A
Subjt:  RREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINA

Query:  INHKIQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAVLSGD
        +N +   L+      EE   L     +  F    R  N L H LAR AVL  D
Subjt:  INHKIQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAVLSGD

TrEMBL top hitse value%identityAlignment
A0A5D3E1D7 Transforming growth factor-beta receptor-associated protein 1 isoform X16.2e-1336.77Show/hide
Query:  NVLVGKISLHMEEFCGGSSVDRLFFRREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKA
        NVL+ +  +  EEF   +SV     RRE   S   W  P  G WK+N DA W +    GGI W+V DS GS IL GCEK             ++I+G   
Subjt:  NVLVGKISLHMEEFCGGSSVDRLFFRREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKA

Query:  LVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSKLSSFVEEMGTLAVSAHVVFF
          D   H     V++E  C +LI A   +  DLS+L+  V+E+ +LAVS  V+ +
Subjt:  LVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSKLSSFVEEMGTLAVSAHVVFF

A0A5D3E6P6 RNase H domain-containing protein3.2e-1752.27Show/hide
Query:  EILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLV
        E  RSQ++W+SP  GFW+ N DASW ++E + G SWVVRDS G+ ILA CE+  + WP++ L+ALA  RGL    DYF H    DVL+
Subjt:  EILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLV

A0A6J1DNV9 uncharacterized protein LOC1110224031.1e-1234.69Show/hide
Query:  LRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINAINHK
        L ++  W  P    W +N DASW +    GGI W++R   G ++LAG   V     +K L+A A++ GL+ L +    G L  + +E+D   + + +N K
Subjt:  LRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINAINHK

Query:  IQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLA-RAAVL
         +DL+K    VEE+  L  S  ++ F    R  NG  H LA RA+VL
Subjt:  IQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLA-RAAVL

A0A7N2L9Q3 RNase H domain-containing protein1.4e-1233.89Show/hide
Query:  ACNVLVGKISLHMEEFCGGSSVDRLFFRREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGL
        ACN+        +EEF    +  R   + +I+     W  P    +K N DA+ FE  G+ G+  V+RDS G +I A  EK+ L   ++  +ALA  R  
Subjt:  ACNVLVGKISLHMEEFCGGSSVDRLFFRREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGL

Query:  KALVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAVLSGD
           V +    S+F V+VE DC+ +I A+N +   L+     VEE   L     +  F    R  N L H LAR AVLS D
Subjt:  KALVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAVLSGD

A0A7N2N656 RNase H domain-containing protein3.6e-1335.95Show/hide
Query:  RREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINA
        +++I+     W  P    +K N DA+ FE  G+ G+  V+RDS G++I A  EK+ L   ++  +ALA  R     V + A  S+F V+VE DC+ +I A
Subjt:  RREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINA

Query:  INHKIQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAVLSGD
        +N +   L+     VEE   L     +  F    R  N L H LAR AVLS D
Subjt:  INHKIQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAVLSGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-0427.34Show/hide
Query:  WVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSK
        W  P     K N DAS  E   V G+ W++R+S G++I  G  K       +  +   LI  ++A    F H     V+ E D   +   IN K  +  +
Subjt:  WVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRGLKALVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSK

Query:  LSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAV
        L  F++ + +   S   + F +  R  NG    LA+ A+
Subjt:  LSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATGTCTAGATTTACAGGAACTTTTTACTGCATGCAATGTTTTGGTTGGCAAGATCTCTTTGCATATGGAGGAGTTTTGTGGGGGTAGTAGCGTTGATCGGTTGTT
CTTTAGGAGGGAGATTCTGAGGAGTCAGGAGGTGTGGGTGTCGCCTGAATCGGGGTTTTGGAAGATCAACACCGATGCCTCGTGGTTTGAGCTTGAAGGGGTGGGTGGTA
TTAGTTGGGTGGTTCGTGACTCGTTTGGCTCTCTTATCCTAGCTGGGTGTGAGAAAGTGGTCCTCTTTTGGCCCATTAAGTTCCTTGACGCCTTGGCGTTGATTAGGGGT
CTGAAAGCTCTCGTTGACTATTTTGCTCATGGATCCCTTTTCGATGTTTTGGTGGAGTCTGATTGTGTGAATCTTATCAATGCCATTAACCATAAGATTCAAGACTTGTC
GAAGTTGTCGAGTTTTGTTGAGGAGATGGGGACTTTGGCCGTTTCTGCTCATGTGGTTTTCTTTTGTTGGTGTATGCGGTCTGCGAATGGATTGGTGCATCGTTTGGCTC
GTGCTGCAGTGTTGAGTGGTGATTGGATGAGCAAAACGCAACATATTCTTCAATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCCTATTGGCTTCAATATTATATCAGATCTGGATGTAATCTGGCACAATGGTCAATCACATCTTCAACAGTGTTCCTTGGAACACAAGCCCTATCTTGTGCCAT
TGGTTTGGAGTTCGCTCACTGACTGTTGGAGCCCAGCAGACTGTTGGGACAGAGTGTTGATGAAGTTGTATGGTTCGGATCGAGATACCGTTGCCATCCTTTTATGGGAT
GTCTAGATTTACAGGAACTTTTTACTGCATGCAATGTTTTGGTTGGCAAGATCTCTTTGCATATGGAGGAGTTTTGTGGGGGTAGTAGCGTTGATCGGTTGTTCTTTAGG
AGGGAGATTCTGAGGAGTCAGGAGGTGTGGGTGTCGCCTGAATCGGGGTTTTGGAAGATCAACACCGATGCCTCGTGGTTTGAGCTTGAAGGGGTGGGTGGTATTAGTTG
GGTGGTTCGTGACTCGTTTGGCTCTCTTATCCTAGCTGGGTGTGAGAAAGTGGTCCTCTTTTGGCCCATTAAGTTCCTTGACGCCTTGGCGTTGATTAGGGGTCTGAAAG
CTCTCGTTGACTATTTTGCTCATGGATCCCTTTTCGATGTTTTGGTGGAGTCTGATTGTGTGAATCTTATCAATGCCATTAACCATAAGATTCAAGACTTGTCGAAGTTG
TCGAGTTTTGTTGAGGAGATGGGGACTTTGGCCGTTTCTGCTCATGTGGTTTTCTTTTGTTGGTGTATGCGGTCTGCGAATGGATTGGTGCATCGTTTGGCTCGTGCTGC
AGTGTTGAGTGGTGATTGGATGAGCAAAACGCAACATATTCTTCAATCTTAA
Protein sequenceShow/hide protein sequence
MGCLDLQELFTACNVLVGKISLHMEEFCGGSSVDRLFFRREILRSQEVWVSPESGFWKINTDASWFELEGVGGISWVVRDSFGSLILAGCEKVVLFWPIKFLDALALIRG
LKALVDYFAHGSLFDVLVESDCVNLINAINHKIQDLSKLSSFVEEMGTLAVSAHVVFFCWCMRSANGLVHRLARAAVLSGDWMSKTQHILQS