; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G07070 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07070
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytoplasmic tRNA 2-thiolation protein
Genome locationClcChr11:7071684..7071920
RNA-Seq ExpressionClc11G07070
SyntenyClc11G07070
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4347851.1 hypothetical protein G4B88_030584 [Cannabis sativa]3.6e-2466.67Show/hide
Query:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV
        D + G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGLPT GDL YKR FA+GAFLWP F           +HSF D SLL KKV
Subjt:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV

KAF4351382.1 hypothetical protein G4B88_028221 [Cannabis sativa]1.6e-2466.67Show/hide
Query:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV
        D + G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGLPT GDL YKR FA+GAFLWP F           +HSF D SLL KKV
Subjt:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV

KAG6578420.1 hypothetical protein SDJN03_22868, partial [Cucurbita argyrosperma subsp. sororia]3.2e-2875.9Show/hide
Query:  MDNN----GGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHHSFK-DPSLLHKKVM
        M+NN    GG + FQMPLHYPRYSK DYENMPEWKLDRLL+EYGLPT G+LPYKRQFAMGAFLW D+H +FK DPSLL+ K+M
Subjt:  MDNN----GGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHHSFK-DPSLLHKKVM

PON37357.1 hypothetical protein PanWU01x14_320780 [Parasponia andersonii]1.6e-2473.68Show/hide
Query:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHHSFKDPSLLHKKV
        D+N G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGL T GDL YKR FA+GAFLWPD+  +F D SLL KKV
Subjt:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHHSFKDPSLLHKKV

PON65649.1 cytoplasmic tRNA 2-thiolation protein [Trema orientale]2.8e-2465.52Show/hide
Query:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFH-----------HSFKDPSLLHKKV
        D+N G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGL T GDL YKR FA+GAFLWPD+H            +F D SLL KKV
Subjt:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFH-----------HSFKDPSLLHKKV

TrEMBL top hitse value%identityAlignment
A0A2P5ALC9 Uncharacterized protein7.9e-2573.68Show/hide
Query:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHHSFKDPSLLHKKV
        D+N G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGL T GDL YKR FA+GAFLWPD+  +F D SLL KKV
Subjt:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHHSFKDPSLLHKKV

A0A2P5CX72 Cytoplasmic tRNA 2-thiolation protein1.4e-2465.52Show/hide
Query:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFH-----------HSFKDPSLLHKKV
        D+N G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGL T GDL YKR FA+GAFLWPD+H            +F D SLL KKV
Subjt:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFH-----------HSFKDPSLLHKKV

A0A7J6DP11 Uncharacterized protein1.8e-2466.67Show/hide
Query:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV
        D + G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGLPT GDL YKR FA+GAFLWP F           +HSF D SLL KKV
Subjt:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV

A0A7J6DZ12 Uncharacterized protein7.9e-2566.67Show/hide
Query:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV
        D + G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGLPT GDL YKR FA+GAFLWP F           +HSF D SLL KKV
Subjt:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV

A0A803NG19 Uncharacterized protein1.8e-2466.67Show/hide
Query:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV
        D + G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGLPT GDL YKR FA+GAFLWP F           +HSF D SLL KKV
Subjt:  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-----------HHSFKDPSLLHKKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09950.1 unknown protein2.1e-1454.93Show/hide
Query:  MDNNGG----GSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGD--LPYKRQFAMGAFLWPDFHH
        +D NG      S F+MPLHYPRY+K+DYE M EW+LD LL EYGL    D  L  KR FA+  F+WP  HH
Subjt:  MDNNGG----GSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGD--LPYKRQFAMGAFLWPDFHH

AT3G11405.1 unknown protein5.3e-1362.96Show/hide
Query:  SSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTR-GDLPYKRQFAMGAFLW
        SSFQMPL YP Y+K+ Y+ M E +LDRLL  YGLPT  G+L  K++FA+GAFLW
Subjt:  SSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTR-GDLPYKRQFAMGAFLW

AT3G55570.1 unknown protein3.6e-2263.01Show/hide
Query:  NGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHHSFKDPSLLHKK
        NG GS F+MPLHYPRYSK+DY++MPEWKLDR+L +YGL T GDL +KR FA+GAFLW     S ++P L  +K
Subjt:  NGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHHSFKDPSLLHKK

AT5G41761.1 unknown protein6.4e-1973.58Show/hide
Query:  SSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLW
        SSFQ+PLHYP+Y+K DYE MPEW+LDRLL EYGLP  GD   KR+FA+GAFLW
Subjt:  SSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLW

AT5G55620.1 unknown protein1.8e-1358.18Show/hide
Query:  SSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPD
        S FQ+PLHYP+YSK DYE M + +LD LL +YG    G L  KR FA+ +FLWPD
Subjt:  SSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAACAATGGAGGAGGCAGTTCTTTTCAAATGCCACTTCACTACCCGAGATACTCGAAGAAGGACTACGAGAACATGCCTGAATGGAAGCTTGACCGCCTTCTCGT
CGAGTATGGTCTCCCGACTCGCGGCGACTTGCCTTACAAACGACAGTTCGCTATGGGTGCTTTCCTTTGGCCTGACTTCCACCATAGCTTTAAAGATCCTTCTCTTCTTC
ATAAGAAAGTTATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAACAATGGAGGAGGCAGTTCTTTTCAAATGCCACTTCACTACCCGAGATACTCGAAGAAGGACTACGAGAACATGCCTGAATGGAAGCTTGACCGCCTTCTCGT
CGAGTATGGTCTCCCGACTCGCGGCGACTTGCCTTACAAACGACAGTTCGCTATGGGTGCTTTCCTTTGGCCTGACTTCCACCATAGCTTTAAAGATCCTTCTCTTCTTC
ATAAGAAAGTTATGTAG
Protein sequenceShow/hide protein sequence
MDNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHHSFKDPSLLHKKVM