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Clc11G07270 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07270
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionActin-related protein 2/3 complex subunit 5
Genome locationClcChr11:7424102..7428264
RNA-Seq ExpressionClc11G07270
SyntenyClc11G07270
Gene Ontology termsGO:0030833 - regulation of actin filament polymerization (biological process)
GO:0034314 - Arp2/3 complex-mediated actin nucleation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005885 - Arp2/3 protein complex (cellular component)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR006789 - Actin-related protein 2/3 complex subunit 5
IPR036743 - Actin-related protein 2/3 complex subunit 5 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056599.1 actin-related protein 2/3 complex subunit 5A [Cucumis melo var. makuwa]4.1e-4097.78Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
XP_008441367.1 PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo]4.1e-4097.78Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
XP_015889484.1 actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba]2.0e-3995.56Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA TGEFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSANWIVVHRA+MAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
XP_022133485.1 actin-related protein 2/3 complex subunit 5A [Momordica charantia]3.5e-3995.56Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
XP_038884940.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida]1.7e-41100Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
TrEMBL top hitse value%identityAlignment
A0A0A0KD59 Actin-related protein 2/3 complex subunit 52.2e-3995.56Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MATT +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
A0A1S3B407 Actin-related protein 2/3 complex subunit 52.0e-4097.78Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
A0A5A7USU9 Actin-related protein 2/3 complex subunit 52.0e-4097.78Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
A0A6J1BVD6 Actin-related protein 2/3 complex subunit 51.7e-3995.56Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
A0A6P4A354 Actin-related protein 2/3 complex subunit 59.9e-4095.56Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA TGEFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSANWIVVHRA+MAIKDVDGMFSSLDPEYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
SwissProt top hitse value%identityAlignment
B3H6Y2 Actin-related protein 2/3 complex subunit 5B2.4e-3074.44Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA    FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSANWIVVHRA+MAIKD++GM +SL  EYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Q9M117 Actin-related protein 2/3 complex subunit 5A2.1e-3487.06Show/hide
Query:  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        EFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWIVVHRALMAIKD+DGM ++LD EYYDILM
Subjt:  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Arabidopsis top hitse value%identityAlignment
AT4G01710.1 ARP2/3 complex 16 kDa subunit (p16-Arc)1.5e-3587.06Show/hide
Query:  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        EFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWIVVHRALMAIKD+DGM ++LD EYYDILM
Subjt:  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
AT5G65274.1 ARP2/3 complex 16 kDa subunit (p16-Arc)1.7e-3174.44Show/hide
Query:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA    FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSANWIVVHRA+MAIKD++GM +SL  EYYDILM
Subjt:  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAGA
CCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCT
ATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAATAGAGTTTCTCCAAAGCCACTTGGCCATGAACGTGATATTTCT
TTGCTTGAGATGACCAAGACTAAACTCTCAAAGATGAAGAGGAAGCTTACTCTTTTCCAAATCACAATGTATGATCCACCTTCATTGTCCAATAGGAAAACGACG
GAGGTGGCCTCTATTCTTTTTTTAATGAGGATTTTGACTTTAGGCTTGCGAGAAGGGATGTTTATGTTTGGATTACTAACCCGTTGGAGGGCATCTCTTAGATGT
TTAGTTGATGATGGGGGAGTTCCTCCTCCATCCACCTTTCAAAGAGATAGGTCATTTTCTTTGGTTCGTGGGGGTGTGCTTTATTGTGGGATCTTTGGGGGAAGA
GGAACAATAGAGTGTTTCGGGGGTAATCTTTCTAGGCTTGCTGCTAGTATAATTCGCGTCCTTCAACGAGTGCGAAAACAACTTCAAGATAGTGTCAAGAAAGTT
CCGCTAATCAAGACTTCACGGGATTTTGAATCCACTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAGA
CCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCT
ATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAATAGAGTTTCTCCAAAGCCACTTGGCCATGAACGTGATATTTCT
TTGCTTGAGATGACCAAGACTAAACTCTCAAAGATGAAGAGGAAGCTTACTCTTTTCCAAATCACAATGTATGATCCACCTTCATTGTCCAATAGGAAAACGACG
GAGGTGGCCTCTATTCTTTTTTTAATGAGGATTTTGACTTTAGGCTTGCGAGAAGGGATGTTTATGTTTGGATTACTAACCCGTTGGAGGGCATCTCTTAGATGT
TTAGTTGATGATGGGGGAGTTCCTCCTCCATCCACCTTTCAAAGAGATAGGTCATTTTCTTTGGTTCGTGGGGGTGTGCTTTATTGTGGGATCTTTGGGGGAAGA
GGAACAATAGAGTGTTTCGGGGGTAATCTTTCTAGGCTTGCTGCTAGTATAATTCGCGTCCTTCAACGAGTGCGAAAACAACTTCAAGATAGTGTCAAGAAAGTT
CCGCTAATCAAGACTTCACGGGATTTTGAATCCACTGCTTGA
Protein sequenceShow/hide protein sequence
MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMNRVSPKPLGHERDIS
LLEMTKTKLSKMKRKLTLFQITMYDPPSLSNRKTTEVASILFLMRILTLGLREGMFMFGLLTRWRASLRCLVDDGGVPPPSTFQRDRSFSLVRGGVLYCGIFGGR
GTIECFGGNLSRLAASIIRVLQRVRKQLQDSVKKVPLIKTSRDFESTA