CuGenDBv2

Gene ID	Clc11G07470
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	general transcription factor 3C polypeptide 6-like
Genome location	ClcChr11:7645813..7648543
RNA-Seq Expression	Clc11G07470
Synteny	Clc11G07470
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019481 - Transcription factor TFIIIC, triple barrel domain IPR042771 - TFIIIC subunit GTF3C6-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138617.3 general transcription factor 3C polypeptide 6 [Cucumis sativus]

1.5e-51

89.06

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP
        MEKATIDS SD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA PSET R SRE VEPKQA 
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLLDSAAPNSIS
        +KELK VA VHKILKFKLLDS  P+SIS
Subjt:  RKELKPVASVHKILKFKLLDSAAPNSIS

XP_022939121.1 uncharacterized protein LOC111445121, partial [Cucurbita moschata]

2.0e-51

83.58

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP
        MEKA IDS SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PSET+RRS +AVEP QAP
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL------DSAAPNSIS
        R++LKPVASVHKILKFKLL      DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL------DSAAPNSIS

XP_022993830.1 uncharacterized protein LOC111489725 [Cucurbita maxima]

1.5e-51

85.5

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP
        MEKA IDS SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PS+T+RRS +AVEP QAP
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL---DSAAPNSIS
        RK+LKPVASVHKILKFKLL   DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL---DSAAPNSIS

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]

5.2e-52

85.07

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP
        MEKA IDS SDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PSET+RRS +AVEP QAP
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL------DSAAPNSIS
        RK+LKPVASVHKILKFKLL      DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL------DSAAPNSIS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]

1.6e-56

92.97

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP
        MEKATIDS  D EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEA PSE++RRSREA EPKQAP
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLLDSAAPNSIS
        RKELKPVASVHKILKFKLLDSA PNSIS
Subjt:  RKELKPVASVHKILKFKLLDSAAPNSIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LML8 TFIIIC_sub6 domain-containing protein

2.1e-51

88.28

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP
        MEKATIDS SD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA PSET R SRE VEP+QA 
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLLDSAAPNSIS
        +KELK VA VHKILKFKLLDS  P+SIS
Subjt:  RKELKPVASVHKILKFKLLDSAAPNSIS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like

8.1e-51

86.72

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP
        MEKATIDS S+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA PSET+  SREA EPKQA 
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLLDSAAPNSIS
        RKELK  A VHKILKFKLLDS  P+ IS
Subjt:  RKELKPVASVHKILKFKLLDSAAPNSIS

A0A6J1BZW5 uncharacterized protein LOC111006225

1.1e-50

85.5

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVV--EEEAGPSETSRRSREAVEPKQ
        MEK TID  SDGEE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKM+GEYEETIGTCLTFAEEEV VV  EEEAGPSET  R+ EAV P +
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVV--EEEAGPSETSRRSREAVEPKQ

Query:  APRKELKPVASVHKILKFKLL-DSAAPNSIS
        APRKELKP+ASVHKILKFKLL DSA PNS S
Subjt:  APRKELKPVASVHKILKFKLL-DSAAPNSIS

A0A6J1FF13 uncharacterized protein LOC111445121

9.6e-52

83.58

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP
        MEKA IDS SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PSET+RRS +AVEP QAP
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL------DSAAPNSIS
        R++LKPVASVHKILKFKLL      DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL------DSAAPNSIS

A0A6J1JTZ1 uncharacterized protein LOC111489725

7.3e-52

85.5

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Query:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP
        MEKA IDS SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PS+T+RRS +AVEP QAP
Subjt:  MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL---DSAAPNSIS
        RK+LKPVASVHKILKFKLL   DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL---DSAAPNSIS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G80745.1 Transcription factor TFIIIC, tau55-related protein

1.4e-18

47.66

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Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVH
        E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K+K++GEY  TIGTCL F+++         G ++T +            +K ++PVA +H
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVH

Query:  KILKFKL
        KILKF+L
Subjt:  KILKFKL

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein

4.3e-20

52.78

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Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKE-LKPVASV
        EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  KIK++GEY ETIGTCL F+E      +EE   SE            Q P K+ ++PVA +
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKE-LKPVASV

Query:  HKILKFKL
        HKILKF+L
Subjt:  HKILKFKL

Sequences

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CDS sequence

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ATGGAGAAAGCTACAATTGATTCTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCT
ATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACTATAGGCACATGTCTTACCTTCGCGGAAGAGGAAG
TCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTCGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAAGAGTTGAAGCCCGTTGCTTCTGTA
CATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAG

mRNA sequence

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AAAAGAAAAAGAATAAAAAATAAAAAGAAAAAGAATTAGAGTAAGGTAAGGCCGTCCTTCAAACCCCTTCAACCTTTCTCTCTCTACCCACTACGAACAAAAAAGACGTC
GCCGCCTTCTTCCGTCCGACCGCTGCCCGCCTCTACTCATTCCTCCGTCTAACTTTCGACCGCCGTCTCCGACCGATCATCCGCCGCACCACTTAGCAGCCCAGCCACCA
CGCAACTCCTCCGCCTCCGACCTTCCGTCGTCGCCACGCTACCGCCTGAGCTCTGACTAATTTCAAATTTTTATTTGATATTGCTTAGAGATATCTCTAAGGAACATGGA
GAAAGCTACAATTGATTCTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTG
GTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACTATAGGCACATGTCTTACCTTCGCGGAAGAGGAAGTCCCT
GTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTCGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAAGAGTTGAAGCCCGTTGCTTCTGTACATAA
GATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAGTTCACTAAAGAGACTAATGTTATCTGTATATATAACTTTAGCATGCTTCTAAATAAAC
CTTTTGAAAAAAGTAAATTGATAGAACTTGTGGATCGAGTTATAAGTTGTCTATAGTTAGCTGCAATGGACAGACTGCCTAAGAATTTGGATGAGCTTCAAGAACTTGTA
AAATTTTATACTTGAAATCTGAATCTAGGTCCCTATCGAAATTAGTGT

Protein sequence

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MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASV
HKILKFKLLDSAAPNSIS

Clc11G07470 (gene) of Watermelon (cordophanus) v2 genome