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Clc11G07480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosomal_S7 domain-containing protein
Genome locationClcChr11:7648199..7649897
RNA-Seq ExpressionClc11G07480
SyntenyClc11G07480
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN70001.1 Ribosomal protein S7p/S5e family protein, partial [Prunus dulcis]1.3e-3885.15Show/hide
Query:  QTKDLLSKEIRFGTIICP----------RSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDES
        +TKDLLSKEI FGTIICP          RSESNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAVFDES
Subjt:  QTKDLLSKEIRFGTIICP----------RSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDES

Query:  R
        +
Subjt:  R

KAB5511222.1 hypothetical protein DKX38_030147 [Salix brachista]4.1e-4091.3Show/hide
Query:  QTKDLLSKEIRFGTIICPRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI
        +TKDLL KEIRFGTI+CPRSESNSNDSKH FLHYFGNPRTQSYGY KYRISNPSRK RETDTQFKVSKQNSIL+LIDTYRILWKAVFDESR+
Subjt:  QTKDLLSKEIRFGTIICPRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI

KAG8363169.1 hypothetical protein BUALT_BualtMtG0004300 [Buddleja alternifolia]3.2e-4092.39Show/hide
Query:  QTKDLLSKEIRFGTIICPRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI
        +TKDLLSKEIRFGT+ICPRSESNSNDSKH FLHYFGNPRTQSYGYVKYRI  PSRKGRETDTQFKVSKQNSILDLIDTYRIL KAVFDESR+
Subjt:  QTKDLLSKEIRFGTIICPRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI

RZC88934.1 hypothetical protein C5167_030630 [Papaver somniferum]3.5e-3195.89Show/hide
Query:  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI
        SESNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAVFDESR+
Subjt:  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI

RZC92595.1 hypothetical protein C5167_029533 [Papaver somniferum]3.5e-3195.89Show/hide
Query:  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI
        SESNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAVFDESR+
Subjt:  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI

TrEMBL top hitse value%identityAlignment
A0A4Y7KC21 Uncharacterized protein2.2e-3197.22Show/hide
Query:  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR
        SESNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAVFDESR
Subjt:  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESR

A0A5H2Y3L6 Ribosomal protein S7p/S5e family protein (Fragment)6.4e-3985.15Show/hide
Query:  QTKDLLSKEIRFGTIICP----------RSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDES
        +TKDLLSKEI FGTIICP          RSESNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAVFDES
Subjt:  QTKDLLSKEIRFGTIICP----------RSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDES

Query:  R
        +
Subjt:  R

A0A5J5SCK7 Uncharacterized protein6.4e-3193.24Show/hide
Query:  RSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI
        RS SNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTY ILWK VFDESR+
Subjt:  RSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI

A0A5N5IWS1 Uncharacterized protein2.0e-4091.3Show/hide
Query:  QTKDLLSKEIRFGTIICPRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI
        +TKDLL KEIRFGTI+CPRSESNSNDSKH FLHYFGNPRTQSYGY KYRISNPSRK RETDTQFKVSKQNSIL+LIDTYRILWKAVFDESR+
Subjt:  QTKDLLSKEIRFGTIICPRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI

A0A6N2KTW4 Ribosomal_S7 domain-containing protein (Fragment)1.1e-3093.24Show/hide
Query:  RSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI
        RSESNSNDSKH FLHYFGNPRTQSYGY KYRISNPSRK RETDTQFKVSKQNSIL+LIDTYRILWKAVFDESR+
Subjt:  RSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTT
CGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCA
TACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATACGTCGCCGCCTTCTTCCGTCCGACCGCTGCCCGCCTCTACTCATTCCT
CCGTCTAACTTTCGACCGCCGTCTCCGACCGATCATCCGCCGCACCACTTAGCAGCCCAGCCACCACGCAACTCCTCCGCCTCCGACCTTCCGTCGTCGCCACGCTACCG
CCTGAGCTCTGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTT
CGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCA
TACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATACGTCGCCGCCTTCTTCCGTCCGACCGCTGCCCGCCTCTACTCATTCCT
CCGTCTAACTTTCGACCGCCGTCTCCGACCGATCATCCGCCGCACCACTTAGCAGCCCAGCCACCACGCAACTCCTCCGCCTCCGACCTTCCGTCGTCGCCACGCTACCG
CCTGAGCTCTGACTAA
Protein sequenceShow/hide protein sequence
MRQTKDLLSKEIRFGTIICPRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRIRRRLLPSDRCPPLLIP
PSNFRPPSPTDHPPHHLAAQPPRNSSASDLPSSPRYRLSSD