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Clc11G07530 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07530
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein Ycf2
Genome locationClcChr11:7676715..7679681
RNA-Seq ExpressionClc11G07530
SyntenyClc11G07530
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEK78231.1 hypothetical chloroplast RF2 [Mirabilis jalapa]3.0e-2172.09Show/hide
Query:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF +I M        S T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

ANY93419.1 Ycf2 [Hagenia abyssinica]2.3e-2172.09Show/hide
Query:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

ARC96694.1 hypothetical protein RF2 [Leucosidea sericea]2.3e-2172.09Show/hide
Query:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

CAB4314532.1 unnamed protein product [Prunus armeniaca]2.3e-2178.48Show/hide
Query:  NGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        NGF +I M        + T  ALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  NGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

YP_009912686.1 hypothetical protein RF2 [Agrimonia pilosa]2.3e-2172.09Show/hide
Query:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

TrEMBL top hitse value%identityAlignment
A0A1B2FKT2 Protein Ycf21.1e-2172.09Show/hide
Query:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

A0A1V0IJR6 Protein Ycf21.1e-2172.09Show/hide
Query:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

A0A1V0IMK5 Protein Ycf21.1e-2172.09Show/hide
Query:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

A0A6J5XQQ2 Uncharacterized protein1.1e-2178.48Show/hide
Query:  NGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        NGF +I M        + T  ALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  NGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

A0A7D0LA60 Protein Ycf21.5e-2173.26Show/hide
Query:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF  I M        + T  ALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL+S
Subjt:  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

SwissProt top hitse value%identityAlignment
A4QJF8 Protein Ycf22.0e-2370.93Show/hide
Query:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVL+++
Subjt:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

A4QKX4 Protein Ycf2 A2.0e-2370.93Show/hide
Query:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVL+++
Subjt:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

A4QKZ7 Protein Ycf2 B2.0e-2370.93Show/hide
Query:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVL+++
Subjt:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

Q06GT4 Protein Ycf21.2e-2370.93Show/hide
Query:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++S  NGF  I M  +       T  ALSISITQKKSIIDTN IRSALHRQTWDLRS+VRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

Q09FY5 Protein Ycf21.2e-2372.09Show/hide
Query:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        +++I   NGF  I M  +       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLL++
Subjt:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

Arabidopsis top hitse value%identityAlignment
AT2G07722.1 unknown protein1.1e-1081.08Show/hide
Query:  MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFI
        MLPTLP+KGAA FP KMPVPPSGPSKQHNS PR  F+
Subjt:  MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFI

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core1.4e-2470.93Show/hide
Query:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVL+++
Subjt:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core1.4e-2470.93Show/hide
Query:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS
        ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVL+++
Subjt:  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNS

ATMG00170.1 hypothetical protein1.1e-1081.08Show/hide
Query:  MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFI
        MLPTLP+KGAA FP KMPVPPSGPSKQHNS PR  F+
Subjt:  MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFI

ATMG00620.1 hypothetical protein1.1e-1081.08Show/hide
Query:  MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFI
        MLPTLP+KGAA FP KMPVPPSGPSKQHNS PR  F+
Subjt:  MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCTACTCTGCCGAAAAAGGGGGCTGCTTTATTCCCTCACAAAATGCCTGTTCCACCATCTGGGCCCAGCAAGCAGCATAATTCTGTTCCGAGGCTGCGTTTCAT
TCCAGCAACAGTAGTATATGGTTCGAAGCGCCTTGGGGCGGCCCCTCAAATTGTGAATTTTTATTCACTTTATGATTTAATAACTCATAATCCGATCTCCCTAACTAAAT
ATTTGCAACTTGACAATTTCAAACAGACTTTTCAAACCTGGTCTATCGTAGTCCCCATTGCACCGCTAGATAAGAGGCAAACAAAAAAGGGATCCACCTCGAATCAAAAC
TCTTTCTCCTTAGCACAAGCACTAAGTCTTGGTAGGATTCTGACTTGCTGGCCCGTAAACCATTTCAGTGCAGGGCCCGGAAGAGTGGATGATCTGCCAGCTCTTGCAGA
AATTTGTCAAAGTTGTTGTTTGCGAAAGGCTATCAACGTAGACGTATATAGATATAAACGTCTACAAACAAGAGGATTTAATCGGAAATATCGACAGATTCCTGTGTGCG
GGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTA
GCTTTCGAGGCATTTTCGAGTGTTTGGATGCACGTGTTTTGTTCATATTCCTGCGCTGTTAAGAGAAAAATTGTCCCCAAGGCCACCGCTTGTTTCTTTCTTGGATATGC
TCAGTCCGGAAAATATCGAGATGCATGTAATAATCAAGGTTTTGATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACCTGG
GCGGATCATCACCCCTTCATTCTGGCTCTACTTCATTCGCTATTAACAAGACAGCCCACGACCAGAGGATTTCGGCGGAAAATGGATTCTTTTATATTCGCATGGCCGGA
TCAAGAACAGCTCCAGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCA
GGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAATTCACTTTATTTCAACTATCAAAAAGTCACTTTCC
AATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGCCTACTCTGCCGAAAAAGGGGGCTGCTTTATTCCCTCACAAAATGCCTGTTCCACCATCTGGGCCCAGCAAGCAGCATAATTCTGTTCCGAGGCTGCGTTTCAT
TCCAGCAACAGTAGTATATGGTTCGAAGCGCCTTGGGGCGGCCCCTCAAATTGTGAATTTTTATTCACTTTATGATTTAATAACTCATAATCCGATCTCCCTAACTAAAT
ATTTGCAACTTGACAATTTCAAACAGACTTTTCAAACCTGGTCTATCGTAGTCCCCATTGCACCGCTAGATAAGAGGCAAACAAAAAAGGGATCCACCTCGAATCAAAAC
TCTTTCTCCTTAGCACAAGCACTAAGTCTTGGTAGGATTCTGACTTGCTGGCCCGTAAACCATTTCAGTGCAGGGCCCGGAAGAGTGGATGATCTGCCAGCTCTTGCAGA
AATTTGTCAAAGTTGTTGTTTGCGAAAGGCTATCAACGTAGACGTATATAGATATAAACGTCTACAAACAAGAGGATTTAATCGGAAATATCGACAGATTCCTGTGTGCG
GGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTA
GCTTTCGAGGCATTTTCGAGTGTTTGGATGCACGTGTTTTGTTCATATTCCTGCGCTGTTAAGAGAAAAATTGTCCCCAAGGCCACCGCTTGTTTCTTTCTTGGATATGC
TCAGTCCGGAAAATATCGAGATGCATGTAATAATCAAGGTTTTGATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACCTGG
GCGGATCATCACCCCTTCATTCTGGCTCTACTTCATTCGCTATTAACAAGACAGCCCACGACCAGAGGATTTCGGCGGAAAATGGATTCTTTTATATTCGCATGGCCGGA
TCAAGAACAGCTCCAGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCA
GGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAATTCACTTTATTTCAACTATCAAAAAGTCACTTTCC
AATATTAG
Protein sequenceShow/hide protein sequence
MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFIPATVVYGSKRLGAAPQIVNFYSLYDLITHNPISLTKYLQLDNFKQTFQTWSIVVPIAPLDKRQTKKGSTSNQN
SFSLAQALSLGRILTCWPVNHFSAGPGRVDDLPALAEICQSCCLRKAINVDVYRYKRLQTRGFNRKYRQIPVCGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPL
AFEAFSSVWMHVFCSYSCAVKRKIVPKATACFFLGYAQSGKYRDACNNQGFDSRVRLGRQLLQGFDLHSEEDLGGSSPLHSGSTSFAINKTAHDQRISAENGFFYIRMAG
SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNSLYFNYQKVTFQY