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Clc11G07580 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07580
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L22, chloroplastic
Genome locationClcChr11:7697875..7701328
RNA-Seq ExpressionClc11G07580
SyntenyClc11G07580
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88940.1 ribosomal protein L22, partial [Lagenaria siceraria]3.2e-1392.86Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTSLNEEEFKRYQYTILDLNKPG WITKEK TDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
QZL38633.1 ribosomal protein L22 [Citrullus naudinianus]2.2e-1495.24Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTSLNEEEFKRYQYTILDLNKPG+WITKEKSTDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
YP_009326029.1 ribosomal protein L22 [Citrullus lanatus]9.9e-1597.62Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
YP_009431682.1 ribosomal protein L22 [Citrullus rehmii]3.8e-1495.24Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNT LNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
YP_009456185.1 ribosomal protein L22 [Lagenaria siceraria]3.2e-1392.86Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTSLNEEEFKRYQYTILDLNKPG WITKEK TDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
TrEMBL top hitse value%identityAlignment
A0A1P8LDU4 50S ribosomal protein L22, chloroplastic4.8e-1597.62Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
A0A1P8LE31 50S ribosomal protein L22, chloroplastic4.8e-1597.62Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
A0A249RX06 50S ribosomal protein L22, chloroplastic4.8e-1597.62Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
A0A343A8F0 50S ribosomal protein L22, chloroplastic4.8e-1597.62Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
A0A343F2C5 50S ribosomal protein L22, chloroplastic4.8e-1597.62Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
SwissProt top hitse value%identityAlignment
Q4VZM9 50S ribosomal protein L22, chloroplastic9.9e-1076.19Show/hide
Query:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
        LKNTS+NEEEFKRYQYTI   N+PG  ITKEK TDM CYDM+
Subjt:  LKNTSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMF
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTAGCCCTTATAAAAAGAAAACTTATTCTTGAACCCCTTTCACGCTCATGTCACGTCGAGGTACTGCAGAAGAAAAAATTGCAAAATCCGATCCAATTTATCTC
CCTCCTTACGAACAAAAAAGTGGGGCTGCGCCCCAGTTGTACACTCCCTTCGTTCTACGAACCCTTGTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAAA
TAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCTGGTCTACGAGCTGCTACTCAATCAATTAAGGATTCCCGGACTGGACTGAGCGGG
AGGGGAGCTGCTGTCGGTATTGGAAACGCGTTTTTCATTATTCACATTCATATTGACAACAGTGTATCAAACAAATATAATCCGATCGTATTCGTCCATACTATCGGTAG
AGTTTGTAAGACCGCGACTGATCCTGAAAGGAATGAATGGAAAAAGCAGCATGTCGTATCAATGGAAAATTCTAAACTGGCGTACCAAGGGGGATCTTTCGATCACTCTG
TTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAACAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCCGCTGGAGC
CATGATTTCCTTATTCCTGTTCCTAACTCTTCCCCGGGTAGTTCCCAATGTTTGGCACTTTCCATACTTCGTGGGTGCAACATCAACAAATTCACTCATGATCAATTCGT
ATTTCGTTCATTCTATCGGTATGCTCCACTCTCACTCAAAGGAAAAGAACCCTTAAGCTTAAGCATTTCATTTATTGAGCGGTCTCTAACCCCTTTAGTTTTGCCTGTCT
CCTTTAGAATCTATTTCAATTCTTCATTCGGATCTAGTTTAGTTATTGAGACAATTGAAAAAGATTTTTACTTGGGTGACGTTTGGGGAATGGAAGCTGAACTGAAAAAT
ACATCTTTGAATGAAGAAGAGTTTAAAAGATACCAATACACCATATTAGACTTAAACAAACCTGGTGAATGGATAACTAAAGAAAAGTCCACAGATATGACGTGTTATGA
CATGTTTGGAACTCGAATCTTTCCCCAAGGGGAAGAATATGGGCTTGTTGAAGCTATGAAGCTGGTCTACAGTGTCATTGTAGAGAATCCCTGTCTTCAAGCACTTGGCT
TTAGAGCCCTATCACGTAAGACCGAACTGTCTCACGACGTTCTGAACCAAGCTCACGTACCGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTAGCCCTTATAAAAAGAAAACTTATTCTTGAACCCCTTTCACGCTCATGTCACGTCGAGGTACTGCAGAAGAAAAAATTGCAAAATCCGATCCAATTTATCTC
CCTCCTTACGAACAAAAAAGTGGGGCTGCGCCCCAGTTGTACACTCCCTTCGTTCTACGAACCCTTGTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAAA
TAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCTGGTCTACGAGCTGCTACTCAATCAATTAAGGATTCCCGGACTGGACTGAGCGGG
AGGGGAGCTGCTGTCGGTATTGGAAACGCGTTTTTCATTATTCACATTCATATTGACAACAGTGTATCAAACAAATATAATCCGATCGTATTCGTCCATACTATCGGTAG
AGTTTGTAAGACCGCGACTGATCCTGAAAGGAATGAATGGAAAAAGCAGCATGTCGTATCAATGGAAAATTCTAAACTGGCGTACCAAGGGGGATCTTTCGATCACTCTG
TTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAACAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCCGCTGGAGC
CATGATTTCCTTATTCCTGTTCCTAACTCTTCCCCGGGTAGTTCCCAATGTTTGGCACTTTCCATACTTCGTGGGTGCAACATCAACAAATTCACTCATGATCAATTCGT
ATTTCGTTCATTCTATCGGTATGCTCCACTCTCACTCAAAGGAAAAGAACCCTTAAGCTTAAGCATTTCATTTATTGAGCGGTCTCTAACCCCTTTAGTTTTGCCTGTCT
CCTTTAGAATCTATTTCAATTCTTCATTCGGATCTAGTTTAGTTATTGAGACAATTGAAAAAGATTTTTACTTGGGTGACGTTTGGGGAATGGAAGCTGAACTGAAAAAT
ACATCTTTGAATGAAGAAGAGTTTAAAAGATACCAATACACCATATTAGACTTAAACAAACCTGGTGAATGGATAACTAAAGAAAAGTCCACAGATATGACGTGTTATGA
CATGTTTGGAACTCGAATCTTTCCCCAAGGGGAAGAATATGGGCTTGTTGAAGCTATGAAGCTGGTCTACAGTGTCATTGTAGAGAATCCCTGTCTTCAAGCACTTGGCT
TTAGAGCCCTATCACGTAAGACCGAACTGTCTCACGACGTTCTGAACCAAGCTCACGTACCGCTTTAA
Protein sequenceShow/hide protein sequence
MILALIKRKLILEPLSRSCHVEVLQKKKLQNPIQFISLLTNKKVGLRPSCTLPSFYEPLSSIHRDKMEDWCQQIEKNCLFCILSPVPLLPRAGLRAATQSIKDSRTGLSG
RGAAVGIGNAFFIIHIHIDNSVSNKYNPIVFVHTIGRVCKTATDPERNEWKKQHVVSMENSKLAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRVFRWS
HDFLIPVPNSSPGSSQCLALSILRGCNINKFTHDQFVFRSFYRYAPLSLKGKEPLSLSISFIERSLTPLVLPVSFRIYFNSSFGSSLVIETIEKDFYLGDVWGMEAELKN
TSLNEEEFKRYQYTILDLNKPGEWITKEKSTDMTCYDMFGTRIFPQGEEYGLVEAMKLVYSVIVENPCLQALGFRALSRKTELSHDVLNQAHVPL