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Clc11G07600 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07600
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytochrome c oxidase subunit 1
Genome locationClcChr11:7702952..7706244
RNA-Seq ExpressionClc11G07600
SyntenyClc11G07600
Gene Ontology termsGO:0006119 - oxidative phosphorylation (biological process)
GO:0006412 - translation (biological process)
GO:0015990 - electron transport coupled proton transport (biological process)
GO:0022900 - electron transport chain (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0045277 - respiratory chain complex IV (cellular component)
GO:0020037 - heme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004129 - cytochrome-c oxidase activity (molecular function)
InterPro domainsIPR036927 - Cytochrome c oxidase-like, subunit I superfamily
IPR035977 - Ribosomal protein L36 superfamily
IPR023616 - Cytochrome c oxidase-like, subunit I domain
IPR000473 - Ribosomal protein L36
IPR000883 - Cytochrome c oxidase subunit I


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AKE34087.1 cytochrome c oxidase subunit 1, partial [Fragaria vesca subsp. bracteata]6.2e-4998.98Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
AMC32792.1 cytochrome c oxidase subunit 1 [Croton texensis]6.2e-4998.98Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
KAF3973005.1 hypothetical protein CMV_003549 [Castanea mollissima]2.9e-6297.54Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVKSG
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVKSG
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVKSG

Query:  LRIGGPTRLGPDFPAMTGQEGL
        LRIGGPTRLGP FPAMTGQE L
Subjt:  LRIGGPTRLGPDFPAMTGQEGL
QIS40616.1 cytochrome c oxidase subunit 1 [Quercus variabilis]6.2e-4998.98Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
YP_009913642.1 cytochrome c oxidase subunit 1 [Luffa acutangula]6.2e-4998.98Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
TrEMBL top hitse value%identityAlignment
A0A0B4L0I8 Cytochrome c oxidase subunit 1 (Fragment)3.0e-4998.98Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
A0A0B4L0K8 Cytochrome c oxidase subunit 1 (Fragment)3.0e-4998.98Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
A0A0B4L0L2 Cytochrome c oxidase subunit 1 (Fragment)3.0e-4998.98Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
A0A0B4L2F9 Cytochrome c oxidase subunit 1 (Fragment)3.0e-4998.98Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
F8T949 Cytochrome c oxidase subunit 13.0e-4998.98Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
SwissProt top hitse value%identityAlignment
P08743 Cytochrome c oxidase subunit 13.2e-4892.86Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPR IPDYP++YAGWNALSSFGSYISVVGIR FFVVVT TSSSGNNKRCAPSPWAVE+NSTTLEWMVQSPPAFHTFGELPA KETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
P12786 Cytochrome c oxidase subunit 11.0e-4692.86Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNN   A  PWAVEQNSTTLEW+VQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
P14578 Cytochrome c oxidase subunit 11.0e-4693.68Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKS
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVV  TSSSG NKRCA SPWAVEQN TTLEW+VQSPPAFHTFGELPAIKETKS
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKS
P60620 Cytochrome c oxidase subunit 14.2e-4893.88Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGI  FFVVVT T SSGNNKRCAPSPWA+E NSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
P60621 Cytochrome c oxidase subunit 14.2e-4893.88Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGI  FFVVVT T SSGNNKRCAPSPWA+E NSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Arabidopsis top hitse value%identityAlignment
ATCG00760.1 ribosomal protein L363.8e-0471.88Show/hide
Query:  MKIRASIRKICEKCRLIRRRRRIMHRCGKGRN
        MKIRAS+RKICEKCRLIRRR RI+  C   R+
Subjt:  MKIRASIRKICEKCRLIRRRRRIMHRCGKGRN
ATCG00830.1 ribosomal protein L27.7e-0590.91Show/hide
Query:  HRCGKGRNARGIITAGHRGGGH
        H CGKGRNARGIITA HRGGGH
Subjt:  HRCGKGRNARGIITAGHRGGGH
ATCG01310.1 ribosomal protein L27.7e-0590.91Show/hide
Query:  HRCGKGRNARGIITAGHRGGGH
        H CGKGRNARGIITA HRGGGH
Subjt:  HRCGKGRNARGIITAGHRGGGH
ATMG01360.1 cytochrome oxidase3.0e-4993.88Show/hide
Query:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
        MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGI  FFVVVT T SSGNNKRCAPSPWA+E NSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Subjt:  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACCGAAAGGCGTGGTCCAAGAGAAGGAGATGACAGCAATAGTGCACTACTTGAGAACGTGGAGGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGA
AAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACTGCAGGGCATAGAGGGGGAGGTCACATGCATT
TCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCTGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTCGT
CGTTTCTTCGTGGTCGTAACAACCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACA
AAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCTGCTATCAAGGAGACGAAAAGCTATGTGAAGTCGGGGTTGAGAATTGGGGGGCCAACGAGGCTGGGGCCTGATT
TTCCAGCAATGACCGGTCAAGAAGGATTGAACGTCGGATTGATCATCGACTCAACATCTATTATCTTGCCACTTCACATTACAACATGTCTCCTGAAAGGTCAACAAAGA
GCGCCTCCCTCCACACTAAACCGAAAAATCGGACCCCCAGCAGCTCCTTCTTTATTTAGAATTCACACAACCGATATGCGAAAGGAGATCTCATCTATTTTCTTTGTGTC
GAGCAGCTTGCCAGAAAGTTCTCTCTTTATGCAGCATCCAGATGGAATTGAATCCGTGTTATCAAAGGATTTCCTGCAATTATTTCTAGTATGGAATGAGTCAATCATCT
ACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCAGCGAGGGGAAGGGGGGGGGGGGGGGAAGGGAAG
CGAAGCTTAGCGAGCTTTCCGCCGGCCGACCACTACATAAGCCACTGGCGGAGAAAGCTCGAAGAGCTTGCATCATCATGGTGGTCCTCCGAAAATGTAGTACTGCCGAA
TTCCGGGATGCTAGACTTCCGTATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGCTAATGAAATTCATGAATGGGCAATCCGAGAGGCCTCAAAAGCGAT
TCGCTTATGAATCTCCTATTGAAGAGTTATACTATGATCGCTCAGTGGTCCCCATGGAGAAGCATTCAGCCCTTGGAATTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACCGAAAGGCGTGGTCCAAGAGAAGGAGATGACAGCAATAGTGCACTACTTGAGAACGTGGAGGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGA
AAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACTGCAGGGCATAGAGGGGGAGGTCACATGCATT
TCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCTGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTCGT
CGTTTCTTCGTGGTCGTAACAACCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACA
AAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCTGCTATCAAGGAGACGAAAAGCTATGTGAAGTCGGGGTTGAGAATTGGGGGGCCAACGAGGCTGGGGCCTGATT
TTCCAGCAATGACCGGTCAAGAAGGATTGAACGTCGGATTGATCATCGACTCAACATCTATTATCTTGCCACTTCACATTACAACATGTCTCCTGAAAGGTCAACAAAGA
GCGCCTCCCTCCACACTAAACCGAAAAATCGGACCCCCAGCAGCTCCTTCTTTATTTAGAATTCACACAACCGATATGCGAAAGGAGATCTCATCTATTTTCTTTGTGTC
GAGCAGCTTGCCAGAAAGTTCTCTCTTTATGCAGCATCCAGATGGAATTGAATCCGTGTTATCAAAGGATTTCCTGCAATTATTTCTAGTATGGAATGAGTCAATCATCT
ACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCAGCGAGGGGAAGGGGGGGGGGGGGGGAAGGGAAG
CGAAGCTTAGCGAGCTTTCCGCCGGCCGACCACTACATAAGCCACTGGCGGAGAAAGCTCGAAGAGCTTGCATCATCATGGTGGTCCTCCGAAAATGTAGTACTGCCGAA
TTCCGGGATGCTAGACTTCCGTATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGCTAATGAAATTCATGAATGGGCAATCCGAGAGGCCTCAAAAGCGAT
TCGCTTATGAATCTCCTATTGAAGAGTTATACTATGATCGCTCAGTGGTCCCCATGGAGAAGCATTCAGCCCTTGGAATTTCATAA
Protein sequenceShow/hide protein sequence
MRPKGVVQEKEMTAIVHYLRTWRTNMKIRASIRKICEKCRLIRRRRRIMHRCGKGRNARGIITAGHRGGGHMHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIR
RFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVKSGLRIGGPTRLGPDFPAMTGQEGLNVGLIIDSTSIILPLHITTCLLKGQQR
APPSTLNRKIGPPAAPSLFRIHTTDMRKEISSIFFVSSSLPESSLFMQHPDGIESVLSKDFLQLFLVWNESIIYFGILLNKNGDIVPPLIKNFDFWEVSARGRGGGGEGK
RSLASFPPADHYISHWRRKLEELASSWWSSENVVLPNSGMLDFRMRAQAPEQQEPDIVLMKFMNGQSERPQKRFAYESPIEELYYDRSVVPMEKHSALGIS