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Clc11G07630 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07630
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem II protein D1
Genome locationClcChr11:7714035..7715426
RNA-Seq ExpressionClc11G07630
SyntenyClc11G07630
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042170 - plastid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4265712.1 unnamed protein product [Prunus armeniaca]5.0e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSPGVRSQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
CBI32203.3 unnamed protein product, partial [Vitis vinifera]5.0e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSPGVRSQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
PHU30032.1 Photosystem II protein D1 [Capsicum chinense]5.0e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGV SQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
TYH10799.1 hypothetical protein ES288_A07G205900v1 [Gossypium darwinii]6.6e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKA SELSFIPRHNLYPCASYSPGVRSQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
TYI53245.1 hypothetical protein E1A91_D12G305600v1 [Gossypium mustelinum]6.6e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKA SELSFIPRHNLYPCASYSPGVRSQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
TrEMBL top hitse value%identityAlignment
A0A2G3DGB3 Photosystem II protein D12.4e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGV SQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
A0A5D2P1R0 Uncharacterized protein3.2e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKA SELSFIPRHNLYPCASYSPGVRSQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
A0A5D2PUT1 Uncharacterized protein3.2e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKA SELSFIPRHNLYPCASYSPGVRSQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
A0A6J5TZG0 Uncharacterized protein ycf682.4e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSPGVRSQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
D7TNY0 Uncharacterized protein2.4e-1697.87Show/hide
Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
        MRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSPGVRSQKYSHP
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATAT
TCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCGGACAGAAAAACAATGACTTTGGCACTGGACGTTCCAAAAATGGGGTACTATCGGGTCGGGTGAATTCA
ATAATAGAGGCCTGTTGGCATTCCAGCCTTCCTTCTCCTTTCAGGGCGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCT
GTTCGCCCATTAAAGCGGGAGAATGCCGTAGGACTCCAGGAATTTTGGAAGCGGAACATGCTCAAAAGATGCCTGCCTAAAGCATTTCGCTTTGATCATTCGACT
GTCCACCGAGTGAAACGGTATCCTCGTATGGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATTCT
TCTTCTGATGATCGATTCAACCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATAT
TCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCGGACAGAAAAACAATGACTTTGGCACTGGACGTTCCAAAAATGGGGTACTATCGGGTCGGGTGAATTCA
ATAATAGAGGCCTGTTGGCATTCCAGCCTTCCTTCTCCTTTCAGGGCGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCT
GTTCGCCCATTAAAGCGGGAGAATGCCGTAGGACTCCAGGAATTTTGGAAGCGGAACATGCTCAAAAGATGCCTGCCTAAAGCATTTCGCTTTGATCATTCGACT
GTCCACCGAGTGAAACGGTATCCTCGTATGGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATTCT
TCTTCTGATGATCGATTCAACCTCTGA
Protein sequenceShow/hide protein sequence
MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPGQKNNDFGTGRSKNGVLSGRVNSIIEACWHSSLPSPFRAHLDVGSSPPGAVVCSKGWA
VRPLKRENAVGLQEFWKRNMLKRCLPKAFRFDHSTVHRVKRYPRMESLSFASLRWKFYFPRMYPNFWPNSSSDDRFNL