CuGenDBv2

Gene ID	Clc11G07650
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Genome location	ClcChr11:7716262..7728323
RNA-Seq Expression	Clc11G07650
Synteny	Clc11G07650
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

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GenBank top hits

e value

%identity

Alignment

ARS44304.1 hypothetical chloroplast RF21 [Morella rubra]

4.1e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

KAB1207984.1 Protein Ycf2 [Morella rubra]

4.1e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

KAB1228292.1 Protein Ycf2 [Morella rubra]

4.1e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

YP_009917875.1 Ycf2 [Morella salicifolia]

4.1e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

YP_009934806.1 hypothetical chloroplast RF21 [Morella cerifera]

4.1e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

TrEMBL top hits

e value

%identity

Alignment

A0A1X9ZFX8 Protein Ycf2

2.0e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

A0A1X9ZGQ8 Protein Ycf2

2.0e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

A0A6A1V5B6 Protein Ycf2

2.0e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

A0A6A1WUF4 Protein Ycf2

2.0e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

A0A7H1AGU4 Protein Ycf2

2.0e-13

83.02

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS

SwissProt top hits

e value

%identity

Alignment

A6MM80 Protein Ycf2

3.5e-15

81.13

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS

A6MMG6 Protein Ycf2

3.5e-15

81.13

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS

Q09FY5 Protein Ycf2

3.5e-15

81.13

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS

Q0G9F7 Protein Ycf2

3.5e-15

81.13

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS

Q7Y667 Protein Ycf2

3.5e-15

81.13

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

3.1e-14

73.58

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS
        M RLFTEREK+MNNH LPEE EEFLGNPTR+IRSFFSDRWS       PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

3.1e-14

73.58

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Query:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS
        M RLFTEREK+MNNH LPEE EEFLGNPTR+IRSFFSDRWS       PT +S
Subjt:  MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS

Sequences

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CDS sequence

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ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAATCATTCGCTTCCGGAAGAAATCGAAGAATTTCTCGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTC
TGACAGATGGTCACCAGCGAAGAAAACGCCTACGACTAAGTCAGGCGCACTAGCGCACCAAGCAAGAAAACGGTGGATTGACTGGCGAACTCGTGCAATCAACCAAAAGA
GCCTTCGCCTCTCGAGATCCCATACTACCCCCCATAAACTGAAAATCCATAACCCCAATTGCTACGGGCTATTTCACCTCCAGTCCACAGAGATTCATTTCACCGATGCG
AAGAAGTCCTCTCGAGACCGTTCTGTTCCTACTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGGCCAGTGCCCTACGTGTCCGA
ATATTATGTATTCACGGGTTCCCTCGTTCCCATCGCCTCTCGATTAATGTCGCATACCCTGAGGACGGACAAATTTCCGATAGCGAATTACTTGACTCAATGGATGGAGG
GAGGGCCCCCCAACTTAAGCACGAAATCAATGTTGAGTCAACAATCATCGAGAGGGGCACCACCAAGCGAGATCGAGACCAGCACCTTGGCCTTGGATAGGGGCGCAAGC
GGCCCTTTCGCGACTCAAACTGCCGATACGCTTTCCGGCTCGGAACGACCGACTCAAACGGGCGGGGGCTCTCTATTTGCTTGCAATGCCGGCTGTTCGCCTTTAGTTAG
AAGTAGAGGGCGCCCTTTGCCCCACACTGAAGAAAAACCATTCCCCAAAAAGGGAGAGACGAGGGAATCGTCTGCTCCTGTTTATGTGACGAATCGAACAACCATCGTTA
GGTCCCGAATTCAGCGAACCACCGGATCCAGACCAAGATCTGATCTCCATTACGTGGTACGATATATCTATCGATCCAAAGAACTGACTTTCAGTTGA

mRNA sequence

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Protein sequence

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MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAKKTPTTKSGALAHQARKRWIDWRTRAINQKSLRLSRSHTTPHKLKIHNPNCYGLFHLQSTEIHFTDA
KKSSRDRSVPTPEKVVVYFPSGKSLVGKPRPVPYVSEYYVFTGSLVPIASRLMSHTLRTDKFPIANYLTQWMEGGPPNLSTKSMLSQQSSRGAPPSEIETSTLALDRGAS
GPFATQTADTLSGSERPTQTGGGSLFACNAGCSPLVRSRGRPLPHTEEKPFPKKGETRESSAPVYVTNRTTIVRSRIQRTTGSRPRSDLHYVVRYIYRSKELTFS

Clc11G07650 (gene) of Watermelon (cordophanus) v2 genome