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Clc11G07680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS4 RNA-binding domain-containing protein
Genome locationClcChr11:7724079..7726484
RNA-Seq ExpressionClc11G07680
SyntenyClc11G07680
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006863 - purine nucleobase transport (biological process)
GO:0072530 - purine-containing compound transmembrane transport (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB45754.1 hypothetical protein L484_003838 [Morus notabilis]1.0e-1172.58Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPVSKMIE
        MVHRLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP         ARTVERPP S  ++
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPVSKMIE

GEU50674.1 putative reverse transcriptase domain, ribonuclease H-like domain protein [Tanacetum cinerariifolium]3.8e-1488.24Show/hide
Query:  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS
        WVQLDES+KSRSTYVAARMVHRLFLVLA EPK+ RLLPTVLDLRPGI P S
Subjt:  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS

GEV65044.1 hypothetical protein [Tanacetum cinerariifolium]4.4e-1088.64Show/hide
Query:  RCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSEICP
        R WSRSRLVVPL +IVDSTLISCLSW ALPPSIESSNSLSEI P
Subjt:  RCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSEICP

KAB8477456.1 hypothetical protein FH972_025322 [Carpinus fangiana]1.1e-1352.29Show/hide
Query:  AGREPYPR------PRCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSE------ICPSSGMAEGTQEAKTEQARPKPNADLRRTLAGEFRVS
        AG EPY R       RCWSRSRLVVPLSMIVDSTLISCLSW ALPPSIESSNSLSE       C +S  +E        +   K    L   L G  R S
Subjt:  AGREPYPR------PRCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSE------ICPSSGMAEGTQEAKTEQARPKPNADLRRTLAGEFRVS

Query:  RQVDVQPTV
        R   V  ++
Subjt:  RQVDVQPTV

QHN95475.1 ATP synthase protein [Arachis hypogaea]8.8e-1976.62Show/hide
Query:  VWVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPVS
        VWV LDES+KSR TY+AARMV RLFLVLAREPKR RLLPTVLD RPGI PLSNRNQPP         ARTVERPP S
Subjt:  VWVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPVS

TrEMBL top hitse value%identityAlignment
A0A385G2D1 Uncharacterized protein2.0e-0889.74Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPP
        MV RLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPP

A0A5N6L0P7 Uncharacterized protein5.4e-1452.29Show/hide
Query:  AGREPYPR------PRCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSE------ICPSSGMAEGTQEAKTEQARPKPNADLRRTLAGEFRVS
        AG EPY R       RCWSRSRLVVPLSMIVDSTLISCLSW ALPPSIESSNSLSE       C +S  +E        +   K    L   L G  R S
Subjt:  AGREPYPR------PRCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSE------ICPSSGMAEGTQEAKTEQARPKPNADLRRTLAGEFRVS

Query:  RQVDVQPTV
        R   V  ++
Subjt:  RQVDVQPTV

A0A6L2KRZ9 Putative reverse transcriptase domain, ribonuclease H-like domain protein1.9e-1488.24Show/hide
Query:  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS
        WVQLDES+KSRSTYVAARMVHRLFLVLA EPK+ RLLPTVLDLRPGI P S
Subjt:  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS

A0A6S7L336 S4 RNA-binding domain-containing protein3.4e-0894.59Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQ
        MVHRLFLVLAREPKR RLLPTVLDLRPGI PLSNRNQ
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQ

W9QPI5 Probable purine permease5.1e-1272.58Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPVSKMIE
        MVHRLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP         ARTVERPP S  ++
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPVSKMIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGAGCATAATAAAGAAAAACGGCTGCTGCAACTACAGGTGAAAGTGGCACGGGTCTTGTATGATGGAGACAAAATTACCAGAATCAAAAGGCTGCAACTCGCCTG
CATGAAGCCGGAATCGCTAGTAATCCCCGGTCAGCCATACGGCGGTGAATTCGGCGCAGGCAGGGAACCCTATCCAAGGCCAAGGTGCTGGTCTCGATCTCGCTTGGTGG
TGCCCCTCTCGATGATTGTTGACTCAACATTGATTTCGTGCTTAAGTTGGGGGGCCCTCCCTCCATCCATTGAGTCAAGTAATTCGCTATCGGAAATTTGTCCGTCCTCA
GGGATGGCAGAAGGAACCCAAGAAGCCAAAACCGAACAAGCAAGGCCAAAGCCAAATGCCGACCTAAGAAGGACGCTTGCGGGAGAGTTTCGAGTTTCCCGACAGGTCGA
TGTACAACCGACAGTGTGGGTTCAATTGGATGAATCTGTTAAGTCAAGGTCAACGTACGTAGCTGCAAGGATGGTGCATCGCCTATTTCTCGTTCTCGCTCGGGAGCCAA
AACGAAAACGCCTGCTACCTACTGTACTGGACCTTCGACCAGGTATTCGACCCTTGTCGAATCGGAACCAACCACCCCACTCTAATAATAGGAGAAAGGAAAACGCTCGA
ACAGTTGAGCGGCCGCCCGTCTCGAAGATGATAGAGGGCCAATTATCGTTGCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGAGCATAATAAAGAAAAACGGCTGCTGCAACTACAGGTGAAAGTGGCACGGGTCTTGTATGATGGAGACAAAATTACCAGAATCAAAAGGCTGCAACTCGCCTG
CATGAAGCCGGAATCGCTAGTAATCCCCGGTCAGCCATACGGCGGTGAATTCGGCGCAGGCAGGGAACCCTATCCAAGGCCAAGGTGCTGGTCTCGATCTCGCTTGGTGG
TGCCCCTCTCGATGATTGTTGACTCAACATTGATTTCGTGCTTAAGTTGGGGGGCCCTCCCTCCATCCATTGAGTCAAGTAATTCGCTATCGGAAATTTGTCCGTCCTCA
GGGATGGCAGAAGGAACCCAAGAAGCCAAAACCGAACAAGCAAGGCCAAAGCCAAATGCCGACCTAAGAAGGACGCTTGCGGGAGAGTTTCGAGTTTCCCGACAGGTCGA
TGTACAACCGACAGTGTGGGTTCAATTGGATGAATCTGTTAAGTCAAGGTCAACGTACGTAGCTGCAAGGATGGTGCATCGCCTATTTCTCGTTCTCGCTCGGGAGCCAA
AACGAAAACGCCTGCTACCTACTGTACTGGACCTTCGACCAGGTATTCGACCCTTGTCGAATCGGAACCAACCACCCCACTCTAATAATAGGAGAAAGGAAAACGCTCGA
ACAGTTGAGCGGCCGCCCGTCTCGAAGATGATAGAGGGCCAATTATCGTTGCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATCTGA
Protein sequenceShow/hide protein sequence
MVEHNKEKRLLQLQVKVARVLYDGDKITRIKRLQLACMKPESLVIPGQPYGGEFGAGREPYPRPRCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSEICPSS
GMAEGTQEAKTEQARPKPNADLRRTLAGEFRVSRQVDVQPTVWVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENAR
TVERPPVSKMIEGQLSLRCTRRCRLTSSAFLRSQI