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Clc11G07700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein Ycf2
Genome locationClcChr11:7727673..7731389
RNA-Seq ExpressionClc11G07700
SyntenyClc11G07700
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR011762 - Acetyl-coenzyme A carboxyltransferase, N-terminal
IPR029045 - ClpP/crotonase-like domain superfamily
IPR036394 - Ribosomal protein L22/L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AQU64636.1 Ycf2 [Camptotheca acuminata]7.8e-2068.35Show/hide
Query:  EANDYSSASHEGDNETAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +A+D    S + D +T     +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Subjt:  EANDYSSASHEGDNETAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
QXE40064.1 Ycf2 [Cnidoscolus aconitifolius]6.0e-2056.12Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
        +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+     +  +++       V      P +   C+K   FL+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
YP_008994333.1 hypothetical chloroplast RF21 [Melianthus villosus]3.5e-2063.44Show/hide
Query:  DSREILRFLPEANDYSSASHEGDNE----TAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        DS +I     +A+D   AS + D E    T     +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Subjt:  DSREILRFLPEANDYSSASHEGDNE----TAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
YP_009569725.1 hypothetical protein RF2 [Bougainvillea spectabilis]7.8e-2055.1Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
        +MDMMPEID+FYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+ +   +  +++       V      P +   C+K   FL+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
YP_010145671.1 Ycf2 [Mallotus japonicus]1.0e-1986.21Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG LA     DC+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
TrEMBL top hitse value%identityAlignment
A0A1S6PRX3 Protein Ycf23.8e-2068.35Show/hide
Query:  EANDYSSASHEGDNETAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +A+D    S + D +T     +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Subjt:  EANDYSSASHEGDNETAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
A0A411JNX0 Protein Ycf23.8e-2055.1Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
        +MDMMPEID+FYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+ +   +  +++       V      P +   C+K   FL+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
A0A6G9DY74 Protein Ycf23.8e-2055.1Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
        +MDMMPEID+FYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+ +   +  +++       V      P +   C+K   FL+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
A0A7T1NLZ3 Uncharacterized protein3.8e-2055.1Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
        +MDMMPEID+FYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+ +   +  +++       V      P +   C+K   FL+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV
V9NYF4 Protein Ycf21.7e-2063.44Show/hide
Query:  DSREILRFLPEANDYSSASHEGDNE----TAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        DS +I     +A+D   AS + D E    T     +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Subjt:  DSREILRFLPEANDYSSASHEGDNE----TAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
SwissProt top hitse value%identityAlignment
A4GYV4 Protein Ycf23.9e-2284.48Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
Q09WV7 Protein Ycf23.9e-2284.48Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
Q0ZIV6 Protein Ycf23.9e-2284.48Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
Q14F97 Protein Ycf23.9e-2284.48Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
Q49KT6 Protein Ycf23.9e-2284.48Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
Arabidopsis top hitse value%identityAlignment
ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta2.6e-1392.31Show/hide
Query:  MGGSMGSVVGEKITRLIEYATNQFLPLILACASGGARMQ
        MGGSMGSVVGEKITRLIEYATNQ LPLIL C+SGGARMQ
Subjt:  MGGSMGSVVGEKITRLIEYATNQFLPLILACASGGARMQ
ATCG00810.1 ribosomal protein L225.1e-0985.71Show/hide
Query:  AAANASHNMGFNERDLVISKAEVNQGTTVKKLKPR
        AAANASHN GF E +LVISKAEVNQG TVKKLKPR
Subjt:  AAANASHNMGFNERDLVISKAEVNQGTTVKKLKPR
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core4.4e-2179.31Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +MDMM EIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNES+YL+LG L      DC+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core4.4e-2179.31Show/hide
Query:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ
        +MDMM EIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNES+YL+LG L      DC+
Subjt:  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGGTAGTATGGGATCTGTAGTAGGCGAGAAAATCACCCGTTTGATCGAGTATGCTACCAATCAATTTTTACCTCTTATTTTAGCGTGTGCTTCTGGAGGAGCACG
CATGCAAGTAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGGACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAA
GATCATTGGGCCATGCGGCAGCAAATGCTAGTCACAATATGGGTTTCAACGAAAGAGATTTAGTCATTAGTAAAGCAGAAGTCAATCAAGGTACTACTGTGAAAAAATTA
AAACCTCGAGAGGCGAAGGCTCTTTTGGTTGATTGCACGAGTTCGCCAGTCAATCCACCGTTTTCTTGCTTGGATTCCCGAGAAATTCTTCGATTTCTTCCGGAAGCGAA
TGATTATTCATCTGCTTCTCACGAAGGAGATAATGAAACCGCGAAGATAAGGAAGTCTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAAT
TAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGAAAGCTAGCCATGCTTTATGGTGAA
GACTGTCAGGCATTTGGTGTCCTTTCTGCCGGCCTGCTTAGCGACAGAGCCACCCTCTTGGGGGTCAGTGAGGAGGGCAATCCCCCACTCCGGCGGTTTCCTTGTGTTAA
GAATGGATACTTCTTGGTGTTTGCTGGAATTCCGACTTGGGGGTTGAATATTGAGTTCCGCTTAGGCTACGTGTTCTGTTTACGCGCTACTAAGCCGGCACACAGGATCT
TAGACAGAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCTGTTGCTACCGCGGGCTGGGTTCGATTTCCGGGCCGGGCGGGAGGTGAAGGCCATAAGAGAA
GATTCCCCGGTAAGGAAGAGAAGAAAAAGGTGTTGTCATCGAGATCGACCTGTTTCCCGAGGCATTGGAAATCCAGACCGGCTCAGAGAATCACTAGCGCTATTTAGCCC
GGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGAAGCACTTTCGAGTGTG
CGCTTTCGTTTTCGAATGTGTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGGTAGTATGGGATCTGTAGTAGGCGAGAAAATCACCCGTTTGATCGAGTATGCTACCAATCAATTTTTACCTCTTATTTTAGCGTGTGCTTCTGGAGGAGCACG
CATGCAAGTAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGGACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAA
GATCATTGGGCCATGCGGCAGCAAATGCTAGTCACAATATGGGTTTCAACGAAAGAGATTTAGTCATTAGTAAAGCAGAAGTCAATCAAGGTACTACTGTGAAAAAATTA
AAACCTCGAGAGGCGAAGGCTCTTTTGGTTGATTGCACGAGTTCGCCAGTCAATCCACCGTTTTCTTGCTTGGATTCCCGAGAAATTCTTCGATTTCTTCCGGAAGCGAA
TGATTATTCATCTGCTTCTCACGAAGGAGATAATGAAACCGCGAAGATAAGGAAGTCTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAAT
TAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGAAAGCTAGCCATGCTTTATGGTGAA
GACTGTCAGGCATTTGGTGTCCTTTCTGCCGGCCTGCTTAGCGACAGAGCCACCCTCTTGGGGGTCAGTGAGGAGGGCAATCCCCCACTCCGGCGGTTTCCTTGTGTTAA
GAATGGATACTTCTTGGTGTTTGCTGGAATTCCGACTTGGGGGTTGAATATTGAGTTCCGCTTAGGCTACGTGTTCTGTTTACGCGCTACTAAGCCGGCACACAGGATCT
TAGACAGAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCTGTTGCTACCGCGGGCTGGGTTCGATTTCCGGGCCGGGCGGGAGGTGAAGGCCATAAGAGAA
GATTCCCCGGTAAGGAAGAGAAGAAAAAGGTGTTGTCATCGAGATCGACCTGTTTCCCGAGGCATTGGAAATCCAGACCGGCTCAGAGAATCACTAGCGCTATTTAGCCC
GGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGAAGCACTTTCGAGTGTG
CGCTTTCGTTTTCGAATGTGTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTTAG
Protein sequenceShow/hide protein sequence
MGGSMGSVVGEKITRLIEYATNQFLPLILACASGGARMQVNGSAGSPIIDGSRTAKPTLHAIVPRITTGKIYKRSLGHAAANASHNMGFNERDLVISKAEVNQGTTVKKL
KPREAKALLVDCTSSPVNPPFSCLDSREILRFLPEANDYSSASHEGDNETAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGE
DCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLVFAGIPTWGLNIEFRLGYVFCLRATKPAHRILDRIEKNCLFCILSPVLLLPRAGFDFRAGREVKAIRE
DSPVRKRRKRCCHRDRPVSRGIGNPDRLRESLALFSPACIRSFPGVGKAKWGHPSPLSALPRAIDIIRSTFECALSFSNVSFSLTSLQAFLIPVLAF