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Clc11G07715 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07715
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein Ycf2
Genome locationClcChr11:7736687..7737584
RNA-Seq ExpressionClc11G07715
SyntenyClc11G07715
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEK71860.1 hypothetical chloroplast RF2 [Curatella americana]4.0e-23100Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
QHB74991.1 hypothetical chloroplast RF21 [Brunellia trianae]4.0e-2392.45Show/hide
Query:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGAHFDH
        LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG    H
Subjt:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGAHFDH
QKV44933.1 hypothetical chloroplast RF2 [Heuchera longipetala var. longipetala]4.0e-23100Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
YP_009471672.1 hypothetical chloroplast RF21 [Parrotia subaequalis]4.0e-23100Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
YP_009714126.1 hypothetical chloroplast RF21 [Rhodoleia championii]4.0e-23100Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
TrEMBL top hitse value%identityAlignment
A0A291EXF0 Protein Ycf22.0e-23100Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
A0A2S1P5D2 Protein Ycf22.0e-23100Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
A0A6B9M6L4 Protein Ycf22.0e-2392.45Show/hide
Query:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGAHFDH
        LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG    H
Subjt:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGAHFDH
A0A6G9DWT2 Protein Ycf22.0e-23100Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
A0A6M8ATS5 Protein Ycf22.0e-23100Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
SwissProt top hitse value%identityAlignment
B1A978 Protein Ycf21.5e-25100Show/hide
Query:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Subjt:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
P08973 Protein Ycf22.0e-2597.96Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIW PWGFLFDCIERPNELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Q0ZIV6 Protein Ycf24.5e-2597.96Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIER NELGFPYWARSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Q49KT6 Protein Ycf25.8e-2597.92Show/hide
Query:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LGFPYWARSFRG
Subjt:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Q68RU4 Protein Ycf21.2e-2597.96Show/hide
Query:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYW+RSFRG
Subjt:  ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core1.3e-2293.75Show/hide
Query:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        LDPQQIEEDLFNHIVWAPRIWRP GFLFDCIERPNELGFPY A SFRG
Subjt:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core1.3e-2293.75Show/hide
Query:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
        LDPQQIEEDLFNHIVWAPRIWRP GFLFDCIERPNELGFPY A SFRG
Subjt:  LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAATTGCCGGAATAGCCGATCTAATATCAGTATACCACTAGCCGGCGGCAACCGTGGAAATTCATTAATTTCAGCCTGTCTCGGGTTCTCTATTGCCCTCGACCC
GCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTC
CCTATTGGGCTAGGTCATTTCGGGGCGCTCATTTTGACCACTTTATCATATTATCATATTTTATCATACTAATTTCTACTCTACCTTCTCGGAGTTCATTCTCCAGAGAA
CTCCATTTTAAGCATTCCGCTGGATTCTTTCCAATCTTCTTATTTTATGATCTCATTGGAAATCATATAAAGACAATTTCTAGTAGTCCTAGCCGTAAACGATGGATACT
AGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAATAGCAACAACCATTTCATCCGGCATGCGTATTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAATTGCCGGAATAGCCGATCTAATATCAGTATACCACTAGCCGGCGGCAACCGTGGAAATTCATTAATTTCAGCCTGTCTCGGGTTCTCTATTGCCCTCGACCC
GCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTC
CCTATTGGGCTAGGTCATTTCGGGGCGCTCATTTTGACCACTTTATCATATTATCATATTTTATCATACTAATTTCTACTCTACCTTCTCGGAGTTCATTCTCCAGAGAA
CTCCATTTTAAGCATTCCGCTGGATTCTTTCCAATCTTCTTATTTTATGATCTCATTGGAAATCATATAAAGACAATTTCTAGTAGTCCTAGCCGTAAACGATGGATACT
AGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAATAGCAACAACCATTTCATCCGGCATGCGTATTTTTGA
Protein sequenceShow/hide protein sequence
MDNCRNSRSNISIPLAGGNRGNSLISACLGFSIALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGAHFDHFIILSYFIILISTLPSRSSFSRE
LHFKHSAGFFPIFLFYDLIGNHIKTISSSPSRKRWILGAVRIDPCSAVANALNSNNHFIRHAYF