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Clc11G07720 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07720
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionZinc finger HIT domain-containing protein 2 isoform X2
Genome locationClcChr11:7741205..7742823
RNA-Seq ExpressionClc11G07720
SyntenyClc11G07720
Gene Ontology termsGO:0015977 - carbon fixation (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0009536 - plastid (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0016829 - lyase activity (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN82922.1 hypothetical protein VITISV_033139 [Vitis vinifera]7.7e-0889.19Show/hide
Query:  VEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEI
        VEIH TQPKKDDGEL EMGTKYF RDLLQIT MAIEI
Subjt:  VEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEI

GEU86977.1 zinc finger HIT domain-containing protein 2 isoform X2 [Tanacetum cinerariifolium]4.2e-0688.57Show/hide
Query:  PKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM
        PK+DDGEL EM TKYFSRDLLQIT MAIEIVSISM
Subjt:  PKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM

GGX41185.1 hypothetical protein GCM10010297_69120 [Streptomyces malachitofuscus]1.1e-0985.71Show/hide
Query:  VEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM
        +EIH  QPKKDDGELAEMGTKYF+RDLLQIT MAIEIVSI M
Subjt:  VEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM

PHU07186.1 Ribulose bisphosphate carboxylase large chain [Capsicum chinense]2.2e-0759.02Show/hide
Query:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISMKVPDPSGSIRTLSYCSRE
        T+EIH  QPKKDDGEL EM TKYFSRDLLQI  MAI+IV+I++ V +   +  TL Y +++
Subjt:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISMKVPDPSGSIRTLSYCSRE

PWA71870.1 hypothetical protein CTI12_AA234240 [Artemisia annua]3.5e-0887.18Show/hide
Query:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIV
        TVEIH TQPK+DDGEL EM TKYFSRDLLQIT MAIEIV
Subjt:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIV

TrEMBL top hitse value%identityAlignment
A0A2G3BL41 Ribulose bisphosphate carboxylase large chain1.1e-0759.02Show/hide
Query:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISMKVPDPSGSIRTLSYCSRE
        T+EIH  QPKKDDGEL EM TKYFSRDLLQI  MAI+IV+I++ V +   +  TL Y +++
Subjt:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISMKVPDPSGSIRTLSYCSRE

A0A2U1NEI7 Uncharacterized protein1.7e-0887.18Show/hide
Query:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIV
        TVEIH TQPK+DDGEL EM TKYFSRDLLQIT MAIEIV
Subjt:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIV

A0A6L2NMW0 Zinc finger HIT domain-containing protein 2 isoform X22.0e-0688.57Show/hide
Query:  PKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM
        PK+DDGEL EM TKYFSRDLLQIT MAIEIVSISM
Subjt:  PKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM

A5B6Y9 ATPase_AAA_core domain-containing protein3.7e-0889.19Show/hide
Query:  VEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEI
        VEIH TQPKKDDGEL EMGTKYF RDLLQIT MAIEI
Subjt:  VEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEI

F6HXM6 Uncharacterized protein1.0e-1088.37Show/hide
Query:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM
        TVEIH TQPKKDDGEL EMGTKYFSRDLLQI  MAIEIVSI+M
Subjt:  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGACCGTGGAAATACATCCCACTCAGCCAAAGAAAGATGATGGAGAGTTGGCCGAAATGGGCACTAAATACTTTTCGAG
AGATCTCCTCCAAATCACTAGTATGGCTATCGAAATCGTGAGCATCAGCATGAAGGTTCCAGATCCAAGTGGTAGTATCAGGACCCTTAGCTATTGTTCTCGAGAAATGA
CCCGGTCTGGCCCATTCCTCGAAAGAACTGAAATAAACCTTCTTTTGAGAGGGAGAAAAAGTCCAACATTTACCTTCCCGCCGAGTAAGAAAATTGGCTTCCTTTGTCTC
ACGCAGGAAAGCATGAACTCTAGAGCAAGCCTTTTAGACTATGGAAGTCAAGCCCGCAGAGCAGTCACAAAGAATAGGTTGTATTCACTGGAACAAGAATCACCTTCATC
TCCTCGGAAGGGCTTATTATTGTTCGTCTACAAATATCCAAATTTTTATACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGACCGTGGAAATACATCCCACTCAGCCAAAGAAAGATGATGGAGAGTTGGCCGAAATGGGCACTAAATACTTTTCGAG
AGATCTCCTCCAAATCACTAGTATGGCTATCGAAATCGTGAGCATCAGCATGAAGGTTCCAGATCCAAGTGGTAGTATCAGGACCCTTAGCTATTGTTCTCGAGAAATGA
CCCGGTCTGGCCCATTCCTCGAAAGAACTGAAATAAACCTTCTTTTGAGAGGGAGAAAAAGTCCAACATTTACCTTCCCGCCGAGTAAGAAAATTGGCTTCCTTTGTCTC
ACGCAGGAAAGCATGAACTCTAGAGCAAGCCTTTTAGACTATGGAAGTCAAGCCCGCAGAGCAGTCACAAAGAATAGGTTGTATTCACTGGAACAAGAATCACCTTCATC
TCCTCGGAAGGGCTTATTATTGTTCGTCTACAAATATCCAAATTTTTATACCTAA
Protein sequenceShow/hide protein sequence
MPEVVTLTARRTVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISMKVPDPSGSIRTLSYCSREMTRSGPFLERTEINLLLRGRKSPTFTFPPSKKIGFLCL
TQESMNSRASLLDYGSQARRAVTKNRLYSLEQESPSSPRKGLLLFVYKYPNFYT