CuGenDBv2

Gene ID	Clc11G07730
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Genome location	ClcChr11:7742918..7743889
RNA-Seq Expression	Clc11G07730
Synteny	Clc11G07730
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

5.6e-41

98.84

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

YP_009751528.1 Ycf2 protein [Thladiantha dubia]

5.6e-41

98.84

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]

5.6e-41

98.84

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

YP_009752370.1 Ycf2 protein [Bryonia marmorata]

5.6e-41

98.84

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

5.6e-41

98.84

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

2.7e-41

98.84

Show/hide

Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

A0A6H0ESM3 Protein Ycf2

2.7e-41

98.84

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

A0A6H0ET42 Protein Ycf2

2.7e-41

98.84

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

A0A6H0EV63 Protein Ycf2

2.7e-41

98.84

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

A0A6M3RUH1 Protein Ycf2

2.7e-41

98.84

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSS TEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

SwissProt top hits

e value

%identity

Alignment

A0A379 Protein Ycf2

2.6e-41

91.86

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSS TEKDCS+FDNDRVTLLLRPEPRNPLDM+Q+GSCSI+DQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

Q09MB4 Protein Ycf2

5.9e-41

93.02

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSV QDLWSLPGPDEKNGITS GLVENDSDLVHGLLEVEGAL+GSS TEKDCSRFDNDRVTLLLRPEPRNPLDM+Q GSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

Q0G9Q1 Protein Ycf2

3.4e-41

90.7

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSV QDLWSLPGPDE+NGITSYGLVENDSDLVHGLL+VEGAL+GSS TEKDCS+FDNDRVTLLLRPEPRNPLDM+QNGSCSI+DQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

Q0ZIV6 Protein Ycf2

3.1e-42

94.19

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Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSS TEKDCS+FDNDRVTLLLRPEPRNPLDM+QNGSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

Q2QD30 Protein Ycf2

5.9e-41

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Query:  INFLIGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQ
        +N   GSVVQDLWSL GPDEKNGITSY LVENDS LVHGLLEVEGAL GSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGS SIVDQ
Subjt:  INFLIGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQ

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

5.3e-37

83.72

Show/hide

Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSS TEKDCS+FDNDRVTLL R EPR+PL M+Q+GSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

5.3e-37

83.72

Show/hide

Query:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR
        GSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSS TEKDCS+FDNDRVTLL R EPR+PL M+Q+GSCSIVDQR
Subjt:  GSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQR

Sequences

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CDS sequence

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ATGGGGCGTGGCCAAGTGGTAAGGCAACGGGTTTTGGTCCCGCTATTCGGAGGTTCGAATCCTTCCGTCCCAGATGCTGTAGCGAAATCCATTAATTTTCTCATTGGATC
GGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAG
AAGGCGCTCTGTTGGGATCCTCATGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAACCCAGGAATCCCTTAGATATGATA
CAAAATGGATCTTGTTCTATCGTTGATCAGAGATCGTCCTCAGTTCGGATTGTAGGCTGCAACTCGCCTGCATGA

mRNA sequence

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Protein sequence

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MGRGQVVRQRVLVPLFGGSNPSVPDAVAKSINFLIGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSWTEKDCSRFDNDRVTLLLRPEPRNPLDMI
QNGSCSIVDQRSSSVRIVGCNSPA

Clc11G07730 (gene) of Watermelon (cordophanus) v2 genome