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Clc11G07732 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07732
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytochrome b559 subunit alpha
Genome locationClcChr11:7744759..7746080
RNA-Seq ExpressionClc11G07732
SyntenyClc11G07732
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009539 - photosystem II reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0020037 - heme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013082 - Photosystem II cytochrome b559, alpha subunit, lumenal region
IPR037025 - Photosystem II cytochrome b559, alpha subunit superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES88212.1 cytochrome b559 subunit alpha [Medicago truncatula]3.3e-3078.26Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWL             QC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI

KAF1855882.1 hypothetical protein Lal_00028302 [Lupinus albus]2.1e-3785.42Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEF+RWLAVHGLAVP      QYQQC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI

KAF4396250.1 hypothetical protein F8388_019796 [Cannabis sativa]3.3e-3055.28Show/hide
Query:  EIVGSKWTFKISMADCIP--RTFLIEKVAWKSSLIGKNETRYAKMKFLSTVELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF--------
        E+  S  T + S+AD I   R ++I  +   S  I       A   F+ST   GLAYDVFGSPRPNEYFTESRQG+PLITGRFDSLEQLDEF        
Subjt:  EIVGSKWTFKISMADCIP--RTFLIEKVAWKSSLIGKNETRYAKMKFLSTVELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF--------

Query:  -----------MRWLAVHGLAVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI
                   +RWLAVHGLAVP   +    SSNDKPNPN+RA TQ N NEQNVELNRTS+
Subjt:  -----------MRWLAVHGLAVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI

XP_027187174.1 LOW QUALITY PROTEIN: uncharacterized protein LOC113785018 [Cicer arietinum]1.6e-3785.42Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWLAVHGLAVP      +YQQC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI

XP_034508898.1 LOW QUALITY PROTEIN: cytochrome b559 subunit alpha-like [Ailuropoda melanoleuca]2.0e-3583.33Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI
        V  GLAYDVFGSPRPNEYFTE+RQGIPLITGRFD LEQLDEF+RWLAVHGLAVP      QYQQC+SSNDK N NYRAMTQSN NEQNVELNRTS+
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI

TrEMBL top hitse value%identityAlignment
A0A0V0HJS1 Cytochrome b559 subunit alpha3.1e-3471.55Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MRWLAVHGLAVP-----IGQYQQCNSSNDKPNPNYRAMT
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF                   +RWLAVHGLAVP       QYQQC+SSNDK NPNYRAMT
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MRWLAVHGLAVP-----IGQYQQCNSSNDKPNPNYRAMT

Query:  QSNLNEQNVELNRTSI
        QSN NEQNVELNRTS+
Subjt:  QSNLNEQNVELNRTSI

A0A3Q7X043 Cytochrome b559 subunit alpha7.9e-3885.42Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWLAVHGLAVP      +YQQC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI

A0A6A5LB38 Cytochrome b559 subunit alpha1.0e-3785.42Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEF+RWLAVHGLAVP      QYQQC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----GQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI

A0A7J6HPJ5 Cytochrome b559 subunit alpha1.6e-3055.28Show/hide
Query:  EIVGSKWTFKISMADCIP--RTFLIEKVAWKSSLIGKNETRYAKMKFLSTVELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF--------
        E+  S  T + S+AD I   R ++I  +   S  I       A   F+ST   GLAYDVFGSPRPNEYFTESRQG+PLITGRFDSLEQLDEF        
Subjt:  EIVGSKWTFKISMADCIP--RTFLIEKVAWKSSLIGKNETRYAKMKFLSTVELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF--------

Query:  -----------MRWLAVHGLAVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI
                   +RWLAVHGLAVP   +    SSNDKPNPN+RA TQ N NEQNVELNRTS+
Subjt:  -----------MRWLAVHGLAVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI

G7JFY7 Cytochrome b559 subunit alpha1.6e-3078.26Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWL             QC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI

SwissProt top hitse value%identityAlignment
P56779 Cytochrome b559 subunit alpha7.4e-1793.18Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

P59702 Cytochrome b559 subunit alpha7.4e-1793.18Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

P69382 Cytochrome b559 subunit alpha7.4e-1793.18Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

Q6EW36 Cytochrome b559 subunit alpha4.4e-1791.3Show/hide
Query:  STVELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        S V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  STVELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

Q70XY9 Cytochrome b559 subunit alpha7.4e-1793.18Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

Arabidopsis top hitse value%identityAlignment
ATCG00580.1 photosystem II reaction center protein E2.0e-1790.91Show/hide
Query:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEF R
Subjt:  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACCAAATCCAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGAAAAGTTC
TTTGATTGGAAAGAACGAGACGAGGTATGCGAAGATGAAATTCCTGAGCACGGTGGAGTTGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTA
CAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTATGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTATCGGT
CAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCTGAACGAACAAAATGTTGAATTGAATCGTACCAGCATTTG
CTCATATAATCTTACTAAAGAAGGAGCCATTTTCATTGTTACCATACCCACTGTTAAAATTAAGTCTGCCTGTCTGATGTTTTATCTAGGCGAGGCTCATTCAATGACGA
GATCAAATCTCAATAGCCCGAAGAGATGCTTGTTCCTTTCTTTCTTTGATTTGAAACATCCCAGCGGCAAATCAAGTGCGGTGAATGCCTCTTTTTCCCCGGAAGTTGTC
GGAATTATTCGTAATAAGATATTGGCTACAATTGAAAAGGCATCGGTACCAACCCCATTCTATAATTTTCAAAATCTCGCAAAAATGCAGCGTGGTTTTTCTCTAAAAAC
TCGGAAGGTTCCGCCAGAAATAGTTTGGGATTCAATCCGGTTTCAATATTTCCCATACGTAATCCTTTGTATAGACGTTGGGGCGGATGAACACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACCAAATCCAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGAAAAGTTC
TTTGATTGGAAAGAACGAGACGAGGTATGCGAAGATGAAATTCCTGAGCACGGTGGAGTTGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTA
CAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTATGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTATCGGT
CAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCTGAACGAACAAAATGTTGAATTGAATCGTACCAGCATTTG
CTCATATAATCTTACTAAAGAAGGAGCCATTTTCATTGTTACCATACCCACTGTTAAAATTAAGTCTGCCTGTCTGATGTTTTATCTAGGCGAGGCTCATTCAATGACGA
GATCAAATCTCAATAGCCCGAAGAGATGCTTGTTCCTTTCTTTCTTTGATTTGAAACATCCCAGCGGCAAATCAAGTGCGGTGAATGCCTCTTTTTCCCCGGAAGTTGTC
GGAATTATTCGTAATAAGATATTGGCTACAATTGAAAAGGCATCGGTACCAACCCCATTCTATAATTTTCAAAATCTCGCAAAAATGCAGCGTGGTTTTTCTCTAAAAAC
TCGGAAGGTTCCGCCAGAAATAGTTTGGGATTCAATCCGGTTTCAATATTTCCCATACGTAATCCTTTGTATAGACGTTGGGGCGGATGAACACTAA
Protein sequenceShow/hide protein sequence
MRPNPKEIVGSKWTFKISMADCIPRTFLIEKVAWKSSLIGKNETRYAKMKFLSTVELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPIG
QYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSICSYNLTKEGAIFIVTIPTVKIKSACLMFYLGEAHSMTRSNLNSPKRCLFLSFFDLKHPSGKSSAVNASFSPEVV
GIIRNKILATIEKASVPTPFYNFQNLAKMQRGFSLKTRKVPPEIVWDSIRFQYFPYVILCIDVGADEH