CuGenDBv2

Gene ID	Clc11G07738
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L16, chloroplastic
Genome location	ClcChr11:7749747..7750031
RNA-Seq Expression	Clc11G07738
Synteny	Clc11G07738
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000114 - Ribosomal protein L16 IPR016180 - Ribosomal protein L10e/L16 IPR036920 - Ribosomal protein L10e/L16 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

YP_009570567.1 50S ribosomal protein L16 [Dioncophyllum thollonii]

1.1e-14

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

YP_009571214.1 50S ribosomal protein L16 [Basella alba]

1.1e-14

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

YP_009572477.1 ribosomal protein L16 [Nyctaginia capitata]

1.1e-14

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

YP_009572563.1 ribosomal protein L16 [Acleisanthes obtusa]

1.1e-14

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

YP_010139655.1 ribosomal protein L16 [Gynura cusimbua]

1.1e-14

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

TrEMBL top hits

e value

%identity

Alignment

A0A411JND6 50S ribosomal protein L16

5.3e-15

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

A0A411JT03 50S ribosomal protein L16

5.3e-15

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

A0A411L538 50S ribosomal protein L16, chloroplastic

5.3e-15

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

A0A411L5S1 50S ribosomal protein L16, chloroplastic

5.3e-15

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

A0A6M9TTQ1 50S ribosomal protein L16, chloroplastic

5.3e-15

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

SwissProt top hits

e value

%identity

Alignment

A0ZZ72 50S ribosomal protein L16, chloroplastic

1.2e-16

93.02

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGN+ICFGRYA+QALEPAWITSRQIEAGRRAMTRN R
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

B2XWR1 50S ribosomal protein L16, chloroplastic

4.1e-17

95.35

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGN+ICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

P17353 50S ribosomal protein L16, chloroplastic

4.1e-17

95.35

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGN+ICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

Q09WY0 50S ribosomal protein L16, chloroplastic

5.4e-17

95.35

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

Q4VZN1 50S ribosomal protein L16, chloroplastic

3.2e-17

97.67

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        MKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

Arabidopsis top hits

e value

%identity

Alignment

AT2G28830.1 PLANT U-BOX 12

1.5e-09

77.5

Show/hide

Query:  KGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRN
        KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN
Subjt:  KGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRN

ATCG00790.1 ribosomal protein L16

6.1e-16

86.05

Show/hide

Query:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
        +KGIS RGN+ICFGRYA+Q LEPAWITSRQIEAGRRAMTRN R
Subjt:  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAAGGAATATCTTATCGAGGCAATCAGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGC
AATGACACGAAATGCACGGAGCAGCTTTTTCAACTGTCGCCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTC
GAAAGAGGATAGGCCGGTCAAACAAAAACAAGGCGCATGCGTGCTCCTCCAGAAGCACACACTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNARSSFFNCRLISQHAQKPRAAQGLDNRRELASRKRIGRSNKNKAHACSSRSTH

Clc11G07738 (gene) of Watermelon (cordophanus) v2 genome