CuGenDBv2

Gene ID	Clc11G07740
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	ATP synthase subunit beta, chloroplastic
Genome location	ClcChr11:7753356..7757647
RNA-Seq Expression	Clc11G07740
Synteny	Clc11G07740
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0046034 - ATP metabolic process (biological process) GO:1902600 - proton transmembrane transport (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0016020 - membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001892 - Ribosomal protein S13 IPR004100 - ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain IPR036121 - ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAX62993.1 ATP synthase beta subunit, partial [Phyllanthus epiphyllanthus]

6.1e-19

56.91

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Query:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKK
        MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGLMRGM++    GAS   P VG ST  LG  F++     ++ G       SP  + 
Subjt:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKK

Query:  A---IQVRYRLGI-SGNIKIKEL
        A   IQ+  +L I    IK+ +L
Subjt:  A---IQVRYRLGI-SGNIKIKEL

ALE29230.1 ribosomal protein S13 [Heuchera parviflora var. saurensis]

2.1e-19

86.21

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDH+VHWELKRGERA +  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

AUD38493.1 ribosomal protein S13 [Mostuea sp. NW-2017]

1.4e-18

84.48

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

AUD38521.1 ribosomal protein S13 [Deppea grandiflora]

1.0e-18

86.21

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA V  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

PHT60924.1 Ribosomal protein S13, mitochondrial [Capsicum annuum]

1.4e-18

84.48

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

TrEMBL top hits

e value

%identity

Alignment

A0A0M3TGS7 Ribosomal protein S13

1.0e-19

86.21

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDH+VHWELKRGERA +  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

A0A2H4WYZ0 Ribosomal protein S13

5.1e-19

86.21

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA V  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

A0A7D7FCM0 Ribosomal protein S13

6.6e-19

84.48

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

A0A7S9DFZ3 Ribosomal protein S13

6.6e-19

84.48

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

Q4KU83 ATP synthase subunit beta (Fragment)

3.0e-19

56.91

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Query:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKK
        MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGLMRGM++    GAS   P VG ST  LG  F++     ++ G       SP  + 
Subjt:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKK

Query:  A---IQVRYRLGI-SGNIKIKEL
        A   IQ+  +L I    IK+ +L
Subjt:  A---IQVRYRLGI-SGNIKIKEL

SwissProt top hits

e value

%identity

Alignment

A0ZZ42 ATP synthase subunit beta, chloroplastic

1.5e-20

53.66

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Query:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKK
        MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGL RGM++  +   +A++  VG +T  LG  F++     +  G       SP  K 
Subjt:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKK

Query:  A---IQVRYRLGI-SGNIKIKEL
        A   IQ+  +L I    IK+ +L
Subjt:  A---IQVRYRLGI-SGNIKIKEL

P05488 Ribosomal protein S13, mitochondrial

1.8e-21

84.48

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

P08977 Ribosomal protein S13, mitochondrial

2.6e-20

81.03

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Query:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV
        PKKAIQ+RYRLGISGNIKI ELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Subjt:  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV

Q2L917 ATP synthase subunit beta, chloroplastic

1.5e-20

53.66

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Query:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKK
        MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGL RGM++  +   +A++  VG +T  LG  F++     +  G       SP  K 
Subjt:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKK

Query:  A---IQVRYRLGI-SGNIKIKEL
        A   IQ+  +L I    IK+ +L
Subjt:  A---IQVRYRLGI-SGNIKIKEL

Q6QBP2 ATP synthase subunit beta, chloroplastic

3.4e-20

75.71

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Query:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTI
        MPNIYNAL+VKG+DTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGLMRGM++    GA    P VG +T+
Subjt:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00480.1 ATP synthase subunit beta

7.7e-20

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Query:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTI
        MPNIYNAL+VKG+DT GQEINVTCEVQQLLGNNRVRAVAMSAT+GL RGM +  M   + ++  VG +T+
Subjt:  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTI

Sequences

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CDS sequence

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ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGC
TGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGCAATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCCCACGCGTAGGCGTCTCGACGATCTTGCTCGGAC
CGGGCTTTAGTCTTTGGTTGTCATCCTGGAACCAATGGGGCTGGGAATCGCAAGAATTGAGAAGTCCTCCACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATC
AGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGATCAAGATCATATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGC
GCCAGTTGTTGCGCTCGTTCAGGTTCCTGCTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGGCCAGTGCCCTACGTGTCCGTTA
TGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAAC
CCTAGCCCCTGTCCGGCTGATCATTCCGCTGGCATCTTGGGTCAACATGAAAACTACCCTACATCTGCGGGAACCCCGCAAATCTTCTCGGCTAGTTACTCTGTGGAAAG
TCCTGTCTACTTTTTACCAAAGCGGAGTCGAAAGCAGAATACAAAGTCCGTTTTTCATGCGGGGGGTGGGGCTAATCCGTTTTCGGGGCCGAAACTCTTTTTTCTTGAAA
CCAGAGGACGAGCAGCGGTACCAGGGTGA

mRNA sequence

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Protein sequence

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MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKAIQVRYRLGI
SGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQVPAPEKVVVYFPSGKSLVGKPRPVPYVSVMLRMLRHRIDQPSSRSFPVHSLYISDTQGRTRWEESN
PSPCPADHSAGILGQHENYPTSAGTPQIFSASYSVESPVYFLPKRSRKQNTKSVFHAGGGANPFSGPKLFFLETRGRAAVPG

Clc11G07740 (gene) of Watermelon (cordophanus) v2 genome