CuGenDBv2

Gene ID	Clc11G07810
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L23, chloroplastic
Genome location	ClcChr11:7769182..7770174
RNA-Seq Expression	Clc11G07810
Synteny	Clc11G07810
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015979 - photosynthesis (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0009522 - photosystem I (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002615 - Photosystem I PsaJ, reaction centre subunit IX IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23 IPR036062 - Photosystem I PsaJ, reaction centre subunit IX superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF1855813.1 hypothetical protein Lal_00045175 [Lupinus albus]

2.1e-32

71.03

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Query:  MESHHPYITNWC-------------------------VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTM
        MESHHPYITNWC                         VFTDKSIRLL KNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLP KGRRM PIMGHTM
Subjt:  MESHHPYITNWC-------------------------VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTM

Query:  HYRRSIL
        HYRR I+
Subjt:  HYRRSIL

KAG6467610.1 hypothetical protein ZIOFF_074559 [Zingiber officinale]

1.0e-39

75.65

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Query:  MGPSNKSIGIGSVSMESHHPYITNW-----------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTM
        MG  NKSIGIGSVSMESHHP ITNW            VFT+KSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRR GPIMGHTM
Subjt:  MGPSNKSIGIGSVSMESHHPYITNW-----------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTM

Query:  HYRRSILPHITGNEV
        HYRR I+   +G  +
Subjt:  HYRRSILPHITGNEV

QZQ52882.1 ribosomal protein L23 [Zostera japonica]

1.9e-33

62.88

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Query:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV
        MG  NKSIGIGSV +ESHHP+ITNW                                   VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKV
Subjt:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV

Query:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL
        IAMNS+RLP KGRRMGPIMGHTMH  YRR I+
Subjt:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL

YP_009433353.1 ribosomal protein L23 [Zostera marina]

5.0e-34

63.64

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Query:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV
        MG  NKSIGIGSV +ESHHPYITNW                                   VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKV
Subjt:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV

Query:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL
        IAMNS+RLP KGRRMGPIMGHTMH  YRR I+
Subjt:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL

YP_009433372.1 ribosomal protein L23 [Zostera marina]

5.0e-34

63.64

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Query:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV
        MG  NKSIGIGSV +ESHHPYITNW                                   VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKV
Subjt:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV

Query:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL
        IAMNS+RLP KGRRMGPIMGHTMH  YRR I+
Subjt:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL

TrEMBL top hits

e value

%identity

Alignment

A0A290Y2L5 50S ribosomal protein L23, chloroplastic

2.4e-34

63.64

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Query:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV
        MG  NKSIGIGSV +ESHHPYITNW                                   VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKV
Subjt:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV

Query:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL
        IAMNS+RLP KGRRMGPIMGHTMH  YRR I+
Subjt:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL

A0A290Y2N1 50S ribosomal protein L23, chloroplastic

2.4e-34

63.64

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Query:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV
        MG  NKSIGIGSV +ESHHPYITNW                                   VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKV
Subjt:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV

Query:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL
        IAMNS+RLP KGRRMGPIMGHTMH  YRR I+
Subjt:  IAMNSYRLPGKGRRMGPIMGHTMH--YRRSIL

A0A411JSV4 Ribosomal protein L23 (Fragment)

4.3e-31

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Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSILPHITGNEV
        + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPIMGHTMHYRR I+   +G  +
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSILPHITGNEV

A0A411L2K5 50S ribosomal protein L23, chloroplastic

4.3e-31

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Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSILPHITGNEV
        + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPIMGHTMHYRR I+   +G  +
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSILPHITGNEV

A0A6A5N094 50S ribosomal protein L23, chloroplastic

1.0e-32

71.03

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Query:  MESHHPYITNWC-------------------------VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTM
        MESHHPYITNWC                         VFTDKSIRLL KNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLP KGRRM PIMGHTM
Subjt:  MESHHPYITNWC-------------------------VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTM

Query:  HYRRSIL
        HYRR I+
Subjt:  HYRRSIL

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

5.7e-33

91.67

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Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL
        + VFT+KSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPIMGHTMHYRR I+
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL

Q09FP7 50S ribosomal protein L23, chloroplastic

7.5e-33

91.67

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Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL
        + VFTDKSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPIMGHTMHYRR I+
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL

Q0PUX7 50S ribosomal protein L23, chloroplastic

7.5e-33

91.67

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Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL
        + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGP MGHTMHYRR I+
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL

Q0ZIV5 50S ribosomal protein L23, chloroplastic

2.0e-33

93.06

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Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL
        + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPIMGHTMHYRR I+
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL

Q4VZK6 50S ribosomal protein L23, chloroplastic

2.0e-33

93.06

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Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL
        + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPIMGHTMHYRR I+
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00630.1 PSAJ

1.7e-08

74.29

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Query:  DLKVLQRLSPVVSTIWFGALAGLLIEINRLFPDAL
        DLK    ++PV+ST+WFG+LAGLLIEINRLFPDAL
Subjt:  DLKVLQRLSPVVSTIWFGALAGLLIEINRLFPDAL

ATCG00840.1 ribosomal protein L23.1

3.8e-32

87.5

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Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL
        + VFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGK +RMGPI+GHTMHYRR I+
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL

ATCG01300.1 ribosomal protein L23

3.8e-32

87.5

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Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL
        + VFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGK +RMGPI+GHTMHYRR I+
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL

Sequences

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CDS sequence

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ATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCCATACATAACGAATTGGTGTGTATTTACAGACAAAAGTATTCGGTTATTGGG
GAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTTATCGAC
TCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGGTCGATACTTCCACATATTACGGGTAACGAAGTTGCAAAGGGATTCCCGAAC
AACCCTGCAATCATACAGGACGTCAGGATAACTGGTAAGGAATCGTGCCTTGAAAGAAAAAGAAAATCATTTGATCTTGATTTGAAAGTACTGCAACGATTGAGTCCGGT
AGTAAGTACTATATGGTTCGGGGCGTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGAAAAACAATCAAATATCTGCCGATGCCGAGCTACTAA
AGGAGGTAGACCTTCGGTGTCACCTTGAGGGAAGCCCACCAAAGCGGGATTTCGGGCAGGGGTGGGGAAAAGGAGAAATGAGTTCATGCCCGCCGAATTCACATCAGAAA
TCGCCAACATAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MGPSNKSIGIGSVSMESHHPYITNWCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSILPHITGNEVAKGFPN
NPAIIQDVRITGKESCLERKRKSFDLDLKVLQRLSPVVSTIWFGALAGLLIEINRLFPDALKNNQISADAELLKEVDLRCHLEGSPPKRDFGQGWGKGEMSSCPPNSHQK
SPT

Clc11G07810 (gene) of Watermelon (cordophanus) v2 genome